Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 0.0e+00 1428.7 724 100.0
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 0.0e+00 1078.2 717 74.6
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 0.0e+00 1076.2 725 75.6
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.9e-309 1065.4 723 74.0
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.5e-300 1034.6 715 72.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.5e-298 1029.2 707 73.8
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.6e-298 1027.3 724 70.6
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.8e-297 1025.0 726 70.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.0e-296 1021.1 710 72.7
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 7.6e-295 1016.9 723 70.7
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.9e-293 1012.3 718 72.0
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.2e-293 1011.1 719 70.5
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.5e-292 1008.1 716 70.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.7e-291 1005.7 757 68.7
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.0e-291 1005.0 720 70.1
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.9e-291 1004.6 723 70.1
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 5.6e-290 1000.7 726 69.6
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.8e-289 997.7 724 68.9
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.8e-289 997.7 724 68.8
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.2e-289 997.3 726 69.6
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 5.3e-288 994.2 725 69.4
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.0e-287 992.3 710 69.3
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.7e-286 989.2 702 70.8
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.8e-286 988.0 748 68.4
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.4e-286 987.3 723 69.2
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 2.4e-285 985.3 705 69.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.4e-285 984.2 724 69.8
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 5.4e-285 984.2 740 68.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 9.3e-285 983.4 724 70.2
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.0e-284 980.7 723 69.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 6.0e-284 980.7 725 70.2
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 6.0e-284 980.7 723 68.2
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 7.9e-284 980.3 702 70.4
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.3e-283 978.8 707 69.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.3e-283 978.8 702 69.8
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 8.7e-283 976.9 702 69.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.1e-282 976.5 723 67.9
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.5e-282 976.1 705 69.5
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.6e-281 972.6 704 69.7
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.1e-281 972.2 723 68.6
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.8e-281 971.8 707 70.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.8e-280 969.1 700 71.1
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.0e-280 968.0 685 72.0
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 9.0e-280 966.8 724 68.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.0e-279 965.7 704 69.5
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.3e-278 963.0 751 66.4
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.2e-278 962.2 709 67.8
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.9e-278 961.8 704 68.3
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 2.9e-278 961.8 724 67.8
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 8.4e-278 960.3 782 63.7
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 3.2e-277 958.4 724 67.8
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 3.2e-277 958.4 700 69.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 4.2e-277 958.0 707 68.0
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.2e-276 956.4 724 66.6
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.8e-275 952.6 723 67.2
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.5e-274 948.7 737 66.2
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 3.3e-274 948.3 719 66.6
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.3e-274 948.3 710 67.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.2e-271 939.9 684 69.4
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 5.8e-271 937.6 713 66.1
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.2e-270 935.6 706 68.1
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.2e-270 935.6 725 65.8
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.9e-270 934.5 722 65.1
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 4.2e-269 931.4 723 65.1
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 2.7e-268 928.7 723 64.6
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 4.6e-268 927.9 723 65.8
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 6.1e-268 927.5 720 65.6
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.9e-266 922.5 723 65.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.5e-266 922.2 723 64.6
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 5.7e-266 921.0 705 65.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 7.4e-266 920.6 719 65.6
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.6e-265 919.5 705 67.1
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 2.2e-265 919.1 723 64.5
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.8e-265 918.7 707 65.8
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 4.8e-265 917.9 723 64.5
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 4.8e-265 917.9 726 63.6
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.8e-265 917.9 723 64.5
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 4.8e-265 917.9 716 64.4
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.0e-263 912.5 700 65.9
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.1e-261 906.7 682 68.6
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.5e-261 905.6 701 64.8
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 5.1e-259 897.9 657 69.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.7e-258 894.4 707 64.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 9.7e-258 893.6 700 64.9
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.7e-257 892.9 725 63.0
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.2e-257 892.5 700 64.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 4.8e-257 891.3 729 62.3
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 6.3e-257 891.0 680 66.8
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.1e-256 890.2 727 63.3
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.1e-256 888.6 729 62.1
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.1e-256 888.6 728 62.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 3.1e-256 888.6 729 62.4
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-255 886.7 709 63.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.2e-255 886.7 707 64.1
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.0e-254 883.6 703 64.3
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.0e-254 883.6 705 63.8
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-254 883.2 732 62.2
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.4e-253 879.8 726 61.7
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.9e-253 879.4 702 64.2
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 4.2e-253 878.2 707 64.2
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 9.4e-253 877.1 701 64.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.2e-252 876.7 717 63.2
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.6e-252 875.2 669 67.4
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.6e-252 875.2 704 63.9
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.2e-249 865.9 711 63.4
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 8.2e-249 864.0 707 62.1
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.8e-248 862.8 712 61.7
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.2e-247 860.1 745 60.3
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.8e-240 836.3 643 66.4
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.2e-238 829.3 700 61.1
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.8e-235 819.7 724 60.5
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.4e-232 809.3 736 58.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 7.7e-231 804.3 740 58.1
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 6.1e-228 794.7 701 60.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.3e-225 786.9 566 71.2
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.7e-223 779.2 616 66.4
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 2.0e-218 763.1 653 63.4
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.7e-217 760.0 708 56.6
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.1e-216 757.3 707 57.3
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.0e-214 750.7 619 63.8
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.3e-214 750.4 645 61.4
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 5.0e-214 748.4 708 55.5
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.0e-210 736.5 549 69.2
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.9e-208 729.9 578 66.1
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.4e-208 729.6 729 55.0
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-206 722.2 571 65.7
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-197 694.1 562 64.9
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 4.0e-195 685.6 500 69.6
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.4e-187 659.8 712 51.5
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 9.6e-181 637.9 713 51.5
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.1e-157 561.2 870 40.7
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.7e-156 556.2 584 53.3
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.0e-155 551.6 342 78.4
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 7.7e-122 442.2 438 56.2
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.8e-113 413.3 257 78.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.3e-108 396.0 257 75.9
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 6.4e-84 316.2 374 46.0
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-77 295.0 325 49.5
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.5e-77 295.0 503 38.0
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.1e-58 231.5 559 33.3
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.6e-56 223.4 186 60.8
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 3.6e-55 220.7 292 44.9
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.3e-46 190.3 138 65.9
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 2.7e-42 177.9 138 66.7
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 6.7e-41 173.3 136 64.7
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 8.7e-33 146.4 326 32.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 8.2e-31 139.8 198 43.9
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 8.2e-31 139.8 177 46.3
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 3.1e-30 137.9 121 57.0
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 4.1e-30 137.5 121 57.9
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 5.9e-29 133.7 191 44.0
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.7e-23 115.5 121 53.7
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.2e-21 109.4 325 29.8
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 3.2e-19 101.3 93 55.9
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 9.1e-14 83.2 81 46.9
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-13 80.9 63 58.7
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-13 80.9 63 58.7
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.2e-12 78.6 67 53.7
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 8.5e-12 76.6 50 72.0
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.1e-10 72.0 60 55.0
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 3.6e-10 71.2 55 61.8
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 5.2e-09 67.4 37 83.8
Nn1g02457 Nelumbo nucifera HOM05D004359 ORTHO05D005052 9.1e-06 56.6 32 75.0


User provided reference genes

Program Settings