Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 9.3e-170 600.1 303 100.0
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 3.0e-136 488.8 300 79.7
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.5e-135 486.5 300 79.3
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.6e-134 483.0 300 78.0
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.2e-134 482.6 300 78.3
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.8e-134 482.3 300 78.3
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 6.3e-134 481.1 300 77.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.4e-133 479.9 300 77.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.8e-133 479.6 300 76.7
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 2.4e-133 479.2 300 77.3
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 4.1e-133 478.4 300 77.3
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.1e-133 477.2 300 77.3
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.0e-132 476.1 300 77.0
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 2.6e-132 475.7 300 78.0
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 5.9e-132 474.6 299 77.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 5.9e-132 474.6 300 76.7
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.3e-131 473.4 300 77.0
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.3e-131 473.4 300 77.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.3e-131 473.4 300 77.0
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.7e-131 473.0 300 76.3
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.7e-131 473.0 300 77.3
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 2.9e-131 472.2 300 76.3
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 5.0e-131 471.5 300 77.3
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 5.0e-131 471.5 300 76.3
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 5.0e-131 471.5 300 76.0
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 6.5e-131 471.1 301 76.4
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 75.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 6.5e-131 471.1 306 75.5
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 8.5e-131 470.7 316 73.4
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.4e-130 469.9 300 75.0
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.5e-130 469.2 300 76.0
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 3.2e-130 468.8 300 75.0
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.2e-130 468.8 300 75.7
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 4.2e-130 468.4 300 76.0
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 4.2e-130 468.4 300 77.3
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 5.5e-130 468.0 300 77.3
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 9.4e-130 467.2 300 75.3
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 9.4e-130 467.2 300 74.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.2e-129 466.8 300 75.7
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.2e-129 466.8 300 75.7
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.2e-129 466.8 300 76.3
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.2e-129 466.8 300 75.7
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.2e-129 466.8 300 76.7
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.7e-129 465.7 300 75.0
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.6e-129 465.3 300 76.3
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 4.6e-129 464.9 301 74.8
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.6e-129 464.9 300 75.3
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 7.9e-129 464.2 300 73.3
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.0e-128 463.8 300 75.0
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.4e-128 463.4 300 75.7
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.4e-128 463.4 300 74.0
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.4e-128 463.4 301 74.4
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.4e-128 463.4 300 76.0
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 1.4e-128 463.4 300 74.0
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.8e-128 463.0 300 73.0
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.0e-128 462.2 300 75.7
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.9e-128 461.8 302 74.5
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.9e-128 461.8 302 74.8
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.9e-128 461.8 302 74.8
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 5.1e-128 461.5 300 76.3
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 5.1e-128 461.5 300 76.0
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 5.1e-128 461.5 300 73.7
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 6.7e-128 461.1 300 72.7
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 8.8e-128 460.7 300 75.0
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 8.8e-128 460.7 300 73.7
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.1e-127 460.3 300 75.0
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.5e-127 459.9 300 75.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 2.0e-127 459.5 300 73.0
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 2.6e-127 459.1 302 76.2
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 4.4e-127 458.4 300 72.7
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 5.7e-127 458.0 300 74.7
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 7.4e-127 457.6 300 72.3
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.4e-127 457.6 297 75.1
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.7e-126 456.4 302 75.8
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.7e-126 456.4 300 73.0
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.8e-126 455.7 302 75.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.8e-126 455.7 302 75.8
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.8e-126 455.7 300 74.3
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 6.3e-126 454.5 303 75.9
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 6.3e-126 454.5 300 73.7
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 8.2e-126 454.1 302 74.5
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.8e-125 453.0 302 75.2
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.4e-125 452.6 300 72.7
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 6.9e-125 451.1 302 74.8
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 6.9e-125 451.1 299 70.9
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 9.1e-125 450.7 300 72.7
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.6e-124 449.1 299 72.2
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.5e-124 448.4 302 73.5
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 7.7e-124 447.6 302 73.5
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 7.7e-124 447.6 302 74.5
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 1.0e-123 447.2 303 71.6
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.0e-123 447.2 300 74.0
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.0e-123 447.2 300 72.0
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.3e-123 446.8 300 72.0
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.7e-123 446.4 300 72.0
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 2.9e-123 445.7 302 73.5
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.8e-123 445.3 302 73.2
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 3.8e-123 445.3 299 72.2
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 3.8e-123 445.3 300 72.0
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 5.0e-123 444.9 300 72.0
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 8.5e-123 444.1 300 72.0
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.4e-122 443.4 302 72.5
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.9e-122 443.0 299 70.6
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 4.2e-122 441.8 320 69.1
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 7.2e-122 441.0 316 70.6
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 7.2e-122 441.0 302 72.8
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 7.2e-122 441.0 303 71.9
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 9.4e-122 440.7 301 71.4
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.6e-121 439.9 300 70.0
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.0e-120 435.6 303 69.6
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 6.7e-120 434.5 302 70.5
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 3.7e-118 428.7 339 65.2
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 6.3e-118 427.9 297 68.4
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.5e-116 422.2 300 69.3
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 4.5e-116 421.8 291 69.1
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 6.5e-115 417.9 335 63.0
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.1e-114 417.2 249 80.7
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 4.2e-114 415.2 287 68.6
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.5e-111 406.8 259 73.4
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 4.4e-111 405.2 248 78.2
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 9.7e-111 404.1 299 65.9
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 4.8e-110 401.7 298 66.8
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 9.1e-109 397.5 309 66.0
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 2.9e-107 392.5 340 58.5
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 5.5e-106 388.3 301 65.1
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 8.8e-104 380.9 300 63.7
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.6e-103 379.4 300 65.0
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 6.5e-99 364.8 290 59.0
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.6e-92 343.6 209 78.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.7e-92 342.8 209 77.5
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.5e-90 334.3 300 60.0
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 4.7e-89 332.0 508 40.7
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.9e-86 322.0 219 72.6
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 9.2e-85 317.8 199 78.4
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.1e-80 304.3 246 59.3
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.3e-78 297.4 303 50.2
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.2e-73 280.8 239 61.5
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 3.6e-73 279.3 242 62.0
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 9.9e-63 244.6 154 76.0
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.2e-53 212.6 298 38.9
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 4.2e-53 212.6 297 39.7
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.9e-48 195.3 166 58.4
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 1.9e-45 187.2 108 79.6
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 5.5e-37 159.1 102 71.6
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 8.7e-35 151.8 196 48.0
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.5e-34 150.2 84 82.1
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 7.9e-28 128.6 84 75.0
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 3.7e-25 119.8 155 43.2
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 3.1e-24 116.7 277 27.4
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 7.2e-21 105.5 82 65.9
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 7.2e-21 105.5 87 65.5
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.2e-20 104.8 161 39.8
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 3.0e-19 100.1 70 70.0
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.5e-18 97.1 63 71.4
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 4.3e-18 96.3 86 59.3
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 3.8e-14 83.2 121 45.5
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 5.3e-08 62.8 53 64.2


User provided reference genes

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