Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 4.4e-183 644.4 308 100.0
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 2.8e-137 492.3 295 77.6
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 6.4e-134 481.1 297 76.1
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.3e-131 473.4 286 78.0
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.3e-131 473.4 311 75.9
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.7e-131 473.0 310 74.2
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.7e-131 473.0 286 78.0
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 3.9e-131 471.9 310 73.9
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 1.9e-130 469.5 301 74.8
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 3.3e-130 468.8 310 73.2
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 5.6e-130 468.0 309 73.8
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 5.6e-130 468.0 288 76.4
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 3.6e-129 465.3 309 72.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 4.7e-129 464.9 301 75.4
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 6.2e-129 464.5 306 73.5
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 8.1e-129 464.2 311 72.3
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 8.1e-129 464.2 293 75.8
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.1e-128 463.8 285 75.4
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.3e-128 462.6 296 74.3
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 3.1e-128 462.2 309 71.8
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 6.8e-128 461.1 309 71.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.2e-127 460.3 285 75.8
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 1.2e-127 460.3 296 74.3
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.2e-127 460.3 308 71.4
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 2.0e-127 459.5 297 73.4
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 5.8e-127 458.0 310 73.2
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 7.5e-127 457.6 283 76.7
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 9.9e-127 457.2 283 76.3
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.3e-126 456.8 296 73.6
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.7e-126 456.4 278 77.3
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.2e-126 456.1 301 72.4
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 2.9e-126 455.7 287 74.6
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 3.7e-126 455.3 301 72.4
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.7e-126 455.3 285 74.4
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.1e-125 453.8 302 72.5
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.4e-125 453.4 294 74.1
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 1.4e-125 453.4 284 75.0
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 1.9e-125 453.0 301 72.4
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 1.9e-125 453.0 288 74.3
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 4.1e-125 451.8 297 72.1
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 4.1e-125 451.8 285 75.4
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 7.1e-125 451.1 301 71.4
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 7.1e-125 451.1 301 71.4
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 7.1e-125 451.1 280 76.1
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 9.2e-125 450.7 300 72.0
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 9.2e-125 450.7 281 75.4
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 2.1e-124 449.5 279 74.9
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 2.7e-124 449.1 301 71.8
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 2.7e-124 449.1 301 71.4
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 3.5e-124 448.7 297 73.1
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 4.6e-124 448.4 260 80.4
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 4.6e-124 448.4 279 75.6
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 6.0e-124 448.0 302 71.2
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 6.0e-124 448.0 260 80.0
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.0e-123 447.2 285 74.0
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.3e-123 446.8 321 68.5
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.3e-123 446.8 281 75.4
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.7e-123 446.4 263 77.2
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.7e-123 446.4 294 71.4
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 1.7e-123 446.4 280 73.9
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.7e-123 446.4 297 71.7
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.0e-123 445.7 313 70.0
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 3.0e-123 445.7 280 75.4
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 3.9e-123 445.3 299 71.2
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.1e-122 443.7 286 72.4
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.5e-122 443.4 307 70.0
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.5e-122 443.4 295 69.8
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.9e-122 443.0 286 73.1
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 3.3e-122 442.2 285 74.7
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.3e-122 442.2 280 74.3
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 5.6e-122 441.4 286 73.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 9.5e-122 440.7 290 72.8
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.2e-121 440.3 277 74.4
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.1e-120 437.2 294 71.1
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 3.1e-120 435.6 280 72.5
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 5.2e-120 434.9 295 69.2
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 5.8e-119 431.4 316 68.0
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 4.9e-118 428.3 294 68.4
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.1e-117 427.2 298 68.5
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 3.2e-117 425.6 296 67.6
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.2e-116 423.7 295 68.1
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 2.1e-116 422.9 399 55.1
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 6.0e-116 421.4 295 67.5
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 1.3e-115 420.2 287 70.0
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 8.7e-115 417.5 297 66.7
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.5e-114 416.8 261 73.6
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 3.3e-114 415.6 296 66.6
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 4.4e-111 405.2 314 65.3
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 6.4e-110 401.4 246 76.8
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 5.4e-109 398.3 233 78.1
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 3.0e-107 392.5 296 65.9
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 8.1e-105 384.4 287 67.2
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 8.1e-105 384.4 287 67.2
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 1.5e-103 380.2 299 62.9
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 2.0e-103 379.8 257 70.8
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 3.4e-103 379.0 311 61.4
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 3.4e-103 379.0 275 64.7
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 7.1e-101 371.3 212 83.0
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 5.1e-99 365.2 263 64.3
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 5.1e-99 365.2 247 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.6e-97 360.1 250 68.4
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 6.9e-96 354.8 211 79.1
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 8.7e-91 337.8 202 77.2
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 7.4e-90 334.7 202 77.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 2.4e-88 329.7 256 64.8
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 3.1e-88 329.3 242 69.0
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.4e-85 320.5 191 77.5
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 2.5e-69 266.5 296 46.3
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 1.2e-68 264.2 295 47.1
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.0e-67 259.6 294 50.3
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 6.3e-65 251.9 215 58.6
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.1e-64 251.1 264 53.0
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 7.2e-53 211.8 264 43.6
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 7.5e-50 201.8 174 58.0
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 7.0e-48 195.3 280 45.4
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.5e-47 192.6 128 71.1
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.5e-46 188.3 136 66.2
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.0e-38 164.9 97 78.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 4.0e-35 152.9 162 52.5
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 2.4e-32 143.7 94 74.5
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-31 141.4 81 77.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 3.6e-28 129.8 66 81.8
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 4.9e-25 119.4 148 46.6
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 9.2e-16 88.6 65 64.6
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.1e-11 75.1 56 64.3
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 7.5e-10 68.9 57 59.6
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 3.9e-06 56.6 33 69.7


User provided reference genes

Program Settings