Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 2.3e-128 462.2 230 100.0
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.1e-85 320.5 220 71.4
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 2.2e-83 312.8 224 67.4
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 6.5e-83 311.2 222 67.6
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 7.2e-82 307.8 225 67.1
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 9.4e-82 307.4 225 66.7
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 2.1e-81 306.2 222 65.8
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 2.1e-81 306.2 223 68.2
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 6.1e-81 304.7 222 66.2
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.3e-80 302.8 220 67.7
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 5.2e-80 301.6 225 66.2
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 6.7e-80 301.2 232 63.4
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 2.0e-79 299.7 239 63.2
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 2.6e-79 299.3 217 66.4
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 2.6e-79 299.3 225 65.8
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 3.3e-79 298.9 222 64.0
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 3.3e-79 298.9 223 65.5
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 7.5e-79 297.7 222 63.1
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 7.5e-79 297.7 221 63.8
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 9.7e-79 297.4 222 63.5
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 1.3e-78 297.0 222 63.5
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 2.2e-78 296.2 226 64.2
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 2.8e-78 295.8 229 62.9
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.1e-77 293.9 223 62.8
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.1e-77 293.9 222 64.9
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.1e-77 293.9 231 62.8
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.1e-77 293.9 225 63.6
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 2.4e-77 292.7 231 63.2
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 3.1e-77 292.4 222 63.5
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 4.1e-77 292.0 216 64.8
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 5.3e-77 291.6 222 63.1
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 7.0e-77 291.2 224 62.5
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 7.0e-77 291.2 217 64.5
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 7.0e-77 291.2 226 64.2
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 9.1e-77 290.8 225 63.6
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 1.2e-76 290.4 223 61.4
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 1.6e-76 290.0 224 63.4
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.0e-76 289.7 221 62.0
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.0e-76 289.7 223 62.8
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 2.0e-76 289.7 218 63.3
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 4.5e-76 288.5 234 60.7
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 7.7e-76 287.7 215 64.7
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.0e-75 287.3 227 60.8
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 1.0e-75 287.3 223 63.2
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.3e-75 287.0 225 62.2
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.7e-75 286.6 244 58.6
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.9e-75 285.8 225 62.2
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 3.8e-75 285.4 222 62.2
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 5.0e-75 285.0 222 62.2
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 6.5e-75 284.6 230 59.6
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 6.5e-75 284.6 226 61.1
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 6.5e-75 284.6 221 61.5
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.1e-74 283.9 221 61.1
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.1e-74 283.9 220 61.8
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.5e-74 283.5 228 59.6
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.5e-74 283.5 217 61.8
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 1.9e-74 283.1 222 61.7
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 2.5e-74 282.7 220 64.5
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 4.2e-74 282.0 215 62.8
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 7.2e-74 281.2 230 62.6
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 9.4e-74 280.8 219 62.1
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 2.1e-73 279.6 224 62.1
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 2.7e-73 279.3 227 60.8
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 2.7e-73 279.3 219 63.9
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 1.4e-72 276.9 226 60.6
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.4e-72 276.9 234 59.4
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 3.0e-72 275.8 226 60.6
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 5.2e-72 275.0 225 58.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 6.8e-72 274.6 231 58.9
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 8.8e-72 274.2 206 65.0
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.0e-71 273.1 226 58.0
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 4.4e-71 271.9 224 57.6
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.4e-71 271.9 224 57.6
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 2.2e-70 269.6 226 57.5
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 1.1e-69 267.3 218 61.0
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.1e-69 265.4 226 56.6
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 5.9e-68 261.5 225 58.2
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.7e-67 260.0 224 59.4
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 2.3e-67 259.6 230 60.0
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 7.2e-66 254.6 230 59.1
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 4.0e-64 248.8 227 55.9
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-61 240.4 245 52.2
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 5.4e-61 238.4 239 49.8
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 9.2e-61 237.7 245 51.8
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 2.0e-60 236.5 222 52.3
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.7e-60 236.1 245 51.4
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 4.5e-60 235.3 163 66.3
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.0e-59 234.2 220 53.6
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 1.7e-59 233.4 213 57.7
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 2.3e-59 233.0 161 68.9
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.1e-58 230.7 168 67.9
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 9.5e-58 227.6 165 64.8
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 4.0e-56 222.2 142 72.5
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 5.2e-56 221.9 158 65.8
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 6.8e-56 221.5 171 63.7
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 7.5e-55 218.0 223 50.7
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 8.3e-54 214.5 217 50.7
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 4.1e-53 212.2 168 61.3
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 6.0e-52 208.4 169 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 7.8e-52 208.0 231 47.2
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 7.8e-52 208.0 231 47.2
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 8.6e-51 204.5 168 62.5
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.5e-50 203.0 233 48.1
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 9.5e-50 201.1 165 62.4
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 2.1e-49 199.9 233 47.6
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 6.6e-43 178.3 187 47.6
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 2.8e-41 172.9 141 58.9
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 3.6e-41 172.6 121 64.5
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 1.4e-40 170.6 121 63.6
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 4.4e-39 165.6 108 73.1
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 7.8e-36 154.8 120 60.8
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 1.4e-29 134.0 129 55.0
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 3.0e-27 126.3 222 36.5
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 5.1e-27 125.6 143 50.3
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.5e-26 124.0 106 56.6
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 5.6e-26 122.1 146 47.9
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 4.5e-15 85.9 91 46.2
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 4.5e-15 85.9 91 46.2
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.2e-14 83.6 81 49.4
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 3.3e-10 69.7 184 28.8
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 9.6e-10 68.2 47 70.2
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 2.1e-09 67.0 59 54.2
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 2.1e-09 67.0 59 54.2
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 1.5e-07 60.8 183 29.5
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 2.6e-07 60.1 183 28.4
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 5.8e-07 58.9 183 29.0
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 2.2e-06 57.0 186 28.5
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 3.8e-06 56.2 183 30.1
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 3.8e-06 56.2 183 26.2
Eucgr.I00962 Eucalyptus grandis HOM05D003180 ORTHO05D003664 6.4e-06 55.5 174 32.8


User provided reference genes

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