Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 0.0e+00 1186.8 775 100.0
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 7.8e-181 638.3 771 59.8
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 3.3e-179 632.9 745 63.4
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.6e-170 604.0 773 53.8
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 1.6e-170 604.0 773 58.3
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 3.7e-170 602.8 760 60.0
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 1.3e-167 594.3 776 59.8
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 2.5e-166 590.1 754 55.6
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 7.1e-166 588.6 772 57.5
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 3.9e-164 582.8 777 56.1
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.3e-162 577.8 752 57.4
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 4.8e-162 575.9 764 52.4
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 2.6e-160 570.1 779 56.5
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.9e-159 566.6 807 52.9
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 8.4e-159 565.1 774 56.7
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 3.9e-156 556.2 507 63.1
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.5e-155 554.3 752 57.6
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 4.8e-154 549.3 784 57.0
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 1.4e-153 547.7 751 55.4
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.4e-153 547.7 775 56.8
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.8e-153 547.4 751 55.4
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 5.9e-152 542.3 721 59.5
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.0e-151 541.6 755 56.7
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 2.9e-151 540.0 777 55.5
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 9.4e-150 535.0 753 52.3
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.2e-149 534.6 751 54.7
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 3.6e-149 533.1 774 49.5
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.1e-145 521.5 752 54.1
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.8e-145 520.8 776 55.8
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 3.4e-144 516.5 774 50.0
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 7.7e-144 515.4 778 51.7
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.0e-143 515.0 773 55.8
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 1.3e-143 514.6 773 52.4
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 5.0e-143 512.7 751 56.2
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 8.5e-143 511.9 758 55.9
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 2.1e-141 507.3 789 50.4
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.1e-141 507.3 774 51.7
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 2.7e-141 506.9 772 51.2
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 3.6e-141 506.5 736 54.5
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 4.7e-141 506.1 756 54.9
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.8e-140 504.2 768 53.0
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 3.9e-140 503.1 724 53.0
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 3.9e-140 503.1 779 49.7
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 6.7e-140 502.3 769 54.7
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.1e-139 501.5 779 54.9
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 7.4e-139 498.8 757 51.3
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 3.7e-138 496.5 752 52.7
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.4e-137 494.6 776 52.4
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 3.1e-137 493.4 764 50.7
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.1e-137 493.0 774 52.7
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.0e-135 488.4 772 50.5
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.2e-134 483.0 772 52.8
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.2e-133 481.5 780 51.0
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.1e-131 474.9 774 50.8
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 6.3e-130 469.2 776 52.6
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 2.4e-129 467.2 774 46.5
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.1e-129 466.8 757 52.8
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 3.5e-128 463.4 779 49.7
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 4.5e-128 463.0 773 51.6
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 5.9e-128 462.6 777 52.1
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.5e-126 458.0 764 52.6
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.9e-126 457.6 764 52.9
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.5e-126 457.2 776 50.4
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 5.5e-126 456.1 776 50.3
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 9.4e-126 455.3 771 47.3
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 8.0e-125 452.2 745 51.5
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 2.3e-124 450.7 774 51.6
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 5.2e-124 449.5 763 43.9
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.5e-123 448.0 750 51.1
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 5.7e-123 446.0 755 46.8
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 2.2e-122 444.1 770 50.0
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 2.2e-122 444.1 770 50.0
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 3.7e-122 443.4 755 52.5
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.4e-121 441.4 745 51.1
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.4e-121 441.4 745 51.1
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.4e-121 440.7 752 50.9
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 2.7e-120 437.2 762 45.9
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 8.5e-119 432.2 751 52.7
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.1e-118 431.8 774 46.8
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.9e-118 431.0 757 44.4
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.9e-118 431.0 752 48.3
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 9.4e-118 428.7 750 39.2
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.6e-117 427.9 762 48.4
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 2.1e-117 427.6 754 48.8
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 1.3e-114 418.3 761 48.5
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.8e-113 414.5 757 46.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.4e-113 414.1 759 49.1
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 5.9e-112 409.5 697 48.1
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 5.5e-110 402.9 757 44.8
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 4.0e-108 396.7 767 47.1
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 5.2e-108 396.4 772 44.3
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.0e-107 394.4 790 42.5
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 5.7e-107 392.9 507 50.3
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 7.8e-104 382.5 737 51.7
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 2.3e-103 380.9 796 44.8
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 8.6e-103 379.0 674 40.7
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 8.6e-103 379.0 774 44.7
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 3.6e-101 373.6 734 42.9
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.3e-100 370.9 774 43.2
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.6e-99 367.5 776 49.6
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 3.6e-93 347.1 422 51.2
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.9e-82 310.8 702 34.0
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.4e-75 287.0 754 39.9
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.5e-70 271.2 275 57.8
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 3.3e-70 270.8 752 39.5
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.3e-66 258.8 257 59.9
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 7.1e-57 226.5 194 68.6
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 1.9e-54 218.4 194 64.4
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 2.8e-53 214.5 555 45.9
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-52 211.5 369 40.1
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 5.3e-52 210.3 555 46.3
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.1e-44 184.5 186 59.1
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.1e-44 184.1 208 55.8
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 4.2e-41 174.1 136 72.8
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 9.7e-38 162.9 491 45.2
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 8.2e-37 159.8 162 62.3
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.1e-36 159.5 141 70.9
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.6e-35 154.8 124 71.0
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.1e-32 145.2 328 59.5
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-27 129.4 166 49.4
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.3e-26 125.9 187 48.1
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 2.6e-19 101.7 132 44.7
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.7e-18 99.0 95 64.2
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 2.2e-18 98.6 166 47.6
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 5.5e-17 94.0 78 66.7
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.6e-16 92.4 56 85.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 8.0e-16 90.1 55 81.8
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 3.0e-15 88.2 133 41.4
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 9.7e-14 83.2 131 40.5
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.1e-12 79.7 104 45.2
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.7e-11 75.1 110 36.4
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 5.0e-10 70.9 100 46.0
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 5.5e-09 67.4 52 73.1
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 4.0e-07 61.2 96 39.6


User provided reference genes

Program Settings