Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 0.0e+00 1144.8 563 100.0
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 6.7e-198 694.5 491 69.0
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 2.4e-195 686.0 499 66.9
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 6.9e-195 684.5 509 65.0
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 9.1e-195 684.1 490 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 8.5e-193 677.6 497 64.6
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 1.1e-192 677.2 512 63.7
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 7.2e-192 674.5 500 64.8
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 3.6e-191 672.2 510 62.9
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 3.0e-190 669.1 537 60.9
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 5.7e-189 664.8 478 65.5
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 4.8e-188 661.8 497 62.4
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 1.4e-187 660.2 539 60.7
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 9.1e-187 657.5 527 61.7
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 4.5e-186 655.2 490 64.3
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 5.9e-186 654.8 521 61.2
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 1.9e-184 649.8 510 62.7
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 1.4e-182 643.7 484 63.6
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 3.0e-182 642.5 491 63.3
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 1.1e-181 640.6 512 61.9
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 1.5e-181 640.2 535 59.4
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 2.8e-180 636.0 494 60.7
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 3.7e-180 635.6 484 62.2
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 8.2e-180 634.4 484 62.8
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 8.2e-180 634.4 490 62.9
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 1.0e-177 627.5 500 59.4
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 1.7e-177 626.7 494 60.7
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 2.2e-177 626.3 498 60.2
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 1.1e-176 624.0 485 60.6
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 2.7e-175 619.4 489 60.9
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 2.7e-175 619.4 484 61.8
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.8e-174 616.7 538 57.4
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 2.3e-174 616.3 486 61.9
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 3.0e-174 615.9 490 59.6
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 4.4e-173 612.1 491 61.1
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.1e-171 607.4 585 54.0
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 4.1e-171 605.5 489 61.1
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 3.5e-170 602.4 443 65.0
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 1.7e-169 600.1 514 57.2
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 3.8e-169 599.0 488 60.5
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 6.1e-167 591.7 496 59.1
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 8.0e-167 591.3 593 52.1
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 2.3e-166 589.7 440 64.3
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 8.8e-166 587.8 493 58.0
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 7.7e-162 574.7 489 58.1
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.0e-161 574.3 494 59.5
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 2.3e-161 573.2 508 54.1
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 3.8e-161 572.4 490 56.5
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 6.8e-158 561.6 434 61.5
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 8.9e-158 561.2 509 54.6
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 2.6e-157 559.7 499 55.7
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 5.6e-152 542.0 399 64.2
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 3.4e-149 532.7 407 64.1
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 1.3e-148 530.8 430 60.2
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 6.0e-146 521.9 434 57.8
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 6.0e-146 521.9 501 51.1
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 3.0e-145 519.6 512 53.9
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 1.1e-131 474.6 497 49.9
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 6.8e-126 455.3 501 47.7
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 3.6e-111 406.4 498 44.6
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 6.9e-110 402.1 420 49.8
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 1.3e-105 387.9 438 45.9
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 1.0e-100 371.7 330 56.7
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 9.0e-94 348.6 504 41.1
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.5e-88 331.3 282 56.7
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 9.1e-78 295.4 273 56.0
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 5.5e-75 286.2 491 37.9
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 1.1e-72 278.5 341 46.0
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 9.7e-72 275.4 291 47.8
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 1.3e-71 275.0 204 61.3
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 1.5e-69 268.1 179 67.0
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 1.0e-65 255.4 219 57.1
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 6.7e-65 252.7 542 34.9
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.1e-62 245.4 412 39.3
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 8.3e-55 219.2 507 33.3
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.6e-48 197.6 202 49.5
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 7.0e-46 189.5 241 39.8
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 4.7e-42 176.8 114 69.3
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 2.8e-34 151.0 178 42.1
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.5e-27 128.6 84 67.9
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.1e-26 124.8 209 35.4
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 4.6e-21 107.1 495 24.4
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 3.3e-19 100.9 91 54.9
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 4.3e-19 100.5 74 63.5
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 7.3e-19 99.8 84 56.0
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 8.1e-18 96.3 480 22.7
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 1.1e-17 95.9 462 23.4
Pp3c21_12310 Physcomitrium patens HOM05D002360 ORTHO05D006971 1.5e-16 92.0 489 23.9
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 2.0e-16 91.7 486 22.8
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 1.3e-15 89.0 481 22.5
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 1.3e-15 89.0 533 22.9
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.3e-15 89.0 94 48.9
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 1.7e-15 88.6 472 23.3
C04p41610 Brassica napus HOM05D002360 ORTHO05D006971 2.9e-15 87.8 534 22.7
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 2.9e-15 87.8 473 23.0
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 2.9e-15 87.8 472 22.9
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 2.9e-15 87.8 81 58.0
BcaB02g08628 Brassica carinata HOM05D002360 ORTHO05D006971 3.7e-15 87.4 533 22.7
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 4.9e-15 87.0 473 22.6
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 4.9e-15 87.0 485 22.9
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 8.4e-15 86.3 490 22.0
A04p07910 Brassica napus HOM05D002360 ORTHO05D006971 8.4e-15 86.3 533 22.7
ECA232G4402 Erigeron canadensis HOM05D002360 ORTHO05D006971 8.4e-15 86.3 484 23.3
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 1.1e-14 85.9 473 22.8
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 1.1e-14 85.9 473 22.8
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 1.1e-14 85.9 473 22.8
BraA04t16480Z Brassica rapa HOM05D002360 ORTHO05D006971 1.1e-14 85.9 533 22.5
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 1.1e-14 85.9 482 22.8
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.1e-14 85.9 468 22.4
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 1.1e-14 85.9 481 22.5
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 1.1e-14 85.9 466 22.7
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 1.4e-14 85.5 472 22.2
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 1.4e-14 85.5 469 22.4
RcHm_v2.0_Chr4g0411571 Rosa chinensis HOM05D002360 ORTHO05D006971 1.4e-14 85.5 476 22.9
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 1.9e-14 85.1 472 22.2
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 1.9e-14 85.1 473 22.8
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 1.9e-14 85.1 473 22.8
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 2.4e-14 84.7 480 22.7
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 2.4e-14 84.7 478 22.0
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 4.1e-14 84.0 479 22.5
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 4.1e-14 84.0 477 22.2
Sed0014208 Sechium edule HOM05D002360 ORTHO05D006971 4.1e-14 84.0 477 22.4
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 5.4e-14 83.6 471 22.3
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 5.4e-14 83.6 473 22.6
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 5.4e-14 83.6 473 22.6
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 7.1e-14 83.2 472 22.5
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 9.2e-14 82.8 473 22.4
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 9.2e-14 82.8 473 22.4
C03p76930 Brassica napus HOM05D002360 ORTHO05D006971 9.2e-14 82.8 473 22.6
Mapoly0108s0060 Marchantia polymorpha HOM05D002360 ORTHO05D006971 9.2e-14 82.8 477 23.3
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 1.2e-13 82.4 472 22.2
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 1.2e-13 82.4 466 22.1
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 1.2e-13 82.4 478 21.3
A08p24280 Brassica napus HOM05D002360 ORTHO05D006971 1.6e-13 82.0 473 22.4
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 1.6e-13 82.0 488 21.9
Manes.05G193700 Manihot esculenta HOM05D002360 ORTHO05D006971 2.1e-13 81.6 473 22.2
Gorai.011G149900 Gossypium raimondii HOM05D002360 ORTHO05D006971 2.7e-13 81.3 476 22.1
Sabra02G0179300 Salix brachista HOM05D002360 ORTHO05D006971 2.7e-13 81.3 473 22.4
THA.LOC104822231 Tarenaya hassleriana HOM05D002360 ORTHO05D006971 2.7e-13 81.3 467 22.1
TWI63G1808 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 2.7e-13 81.3 465 22.6
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 4.6e-13 80.5 477 22.6
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 4.6e-13 80.5 472 21.8
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 4.6e-13 80.5 472 21.8
AagrBONN_evm.TU.Sc2ySwM_368.2776 Anthoceros agrestis HOM05D002360 ORTHO05D006971 6.0e-13 80.1 492 22.2
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 6.0e-13 80.1 476 21.8
CDE06G2307 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 1.3e-12 79.0 485 21.2
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 1.7e-12 78.6 469 22.8
Actinidia25995 Actinidia chinensis HOM05D002360 ORTHO05D006971 2.3e-12 78.2 472 22.0
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 3.0e-12 77.8 487 22.4
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 5.1e-12 77.0 418 23.2
Potri.002G235200 Populus trichocarpa HOM05D002360 ORTHO05D006971 6.6e-12 76.6 422 22.7
TWI38G1596 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 1.1e-11 75.9 468 22.2
HPP92_015926 Vanilla planifolia HOM05D002360 ORTHO05D006297 4.3e-11 73.9 521 21.9
CDE07G0903 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 1.6e-10 72.0 439 22.3
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 2.1e-10 71.6 66 53.0
Lsat_1_v5_gn_4_89381 Lactuca sativa HOM05D002360 ORTHO05D006971 3.1e-09 67.8 474 22.2
Cfa008674 Carpinus fangiana HOM05D002360 ORTHO05D006971 9.3e-06 56.2 267 23.6


User provided reference genes

Program Settings