Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G522 Amborella trichopoda HOM05D002144 ORTHO05D002170 2.5e-56 221.9 111 100.0
ATR0796G073 Amborella trichopoda HOM05D002144 ORTHO05D002170 4.8e-39 164.5 103 81.6
ATR0097G017 Amborella trichopoda HOM05D002144 ORTHO05D002170 3.8e-20 101.7 66 80.3
CSS0005363 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 2.3e-17 92.4 108 51.9
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 2.3e-17 92.4 117 49.6
Duzib106G0149 Durio zibethinus HOM05D002144 ORTHO05D002170 1.9e-16 89.4 117 47.0
TAR365G0709 Trochodendron aralioides HOM05D002144 ORTHO05D002170 1.9e-16 89.4 116 48.3
COL.COLO4_10536 Corchorus olitorius HOM05D002144 ORTHO05D002170 3.3e-16 88.6 118 47.5
Cfa006639 Carpinus fangiana HOM05D002144 ORTHO05D002170 4.3e-16 88.2 118 47.5
Gohir.A11G268700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 4.3e-16 88.2 117 47.0
Gohir.D11G278700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 4.3e-16 88.2 117 47.0
Gorai.007G300900 Gossypium raimondii HOM05D002144 ORTHO05D002170 4.3e-16 88.2 117 47.0
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 4.3e-16 88.2 118 48.3
GSVIVG01031183001 Vitis vinifera HOM05D002144 ORTHO05D002170 4.3e-16 88.2 118 47.5
Manes.08G116600 Manihot esculenta HOM05D002144 ORTHO05D002170 5.7e-16 87.8 117 47.0
Glyma.03G234800 Glycine max HOM05D002144 ORTHO05D002170 7.4e-16 87.4 115 48.7
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 9.7e-16 87.0 116 49.1
Rhsim05G0137800 Rhododendron simsii HOM05D002144 ORTHO05D002170 9.7e-16 87.0 111 50.5
Glyma.10G151000 Glycine max HOM05D002144 ORTHO05D002170 1.3e-15 86.7 116 46.6
Haze_04128 Corylus avellana HOM05D002144 ORTHO05D002170 2.2e-15 85.9 118 46.6
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 4.8e-15 84.7 108 50.9
Manes.09G171400 Manihot esculenta HOM05D002144 ORTHO05D002170 6.3e-15 84.3 117 44.4
Potri.013G014900 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.1e-14 83.6 121 45.5
Phvul.007G197700 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 1.8e-14 82.8 117 45.3
vmacro19696 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 1.8e-14 82.8 111 49.5
DCAR_029386 Daucus carota HOM05D002144 ORTHO05D002170 4.1e-14 81.6 117 46.2
TPR.G33200 Trifolium pratense HOM05D002144 ORTHO05D002170 5.3e-14 81.3 115 45.2
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 6.9e-14 80.9 108 50.0
Nn3g21509 Nelumbo nucifera HOM05D002144 ORTHO05D002170 9.0e-14 80.5 98 53.1
Nn4g25785 Nelumbo nucifera HOM05D002144 ORTHO05D002170 9.0e-14 80.5 115 48.7
CSS0017301 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 1.2e-13 80.1 95 50.5
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 1.2e-13 80.1 118 46.6
CiPaw.07G022600 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.5e-13 79.7 117 45.3
Prupe.6G319600 Prunus persica HOM05D002144 ORTHO05D002170 1.5e-13 79.7 117 44.4
HanXRQChr11g0320831 Helianthus annuus HOM05D002144 ORTHO05D002170 2.0e-13 79.3 111 46.8
Lalb_Chr21g0310551 Lupinus albus HOM05D002144 ORTHO05D002170 2.0e-13 79.3 118 44.1
Rhsim07G0190700 Rhododendron simsii HOM05D002144 ORTHO05D002170 2.6e-13 79.0 113 46.9
BcaC04g24010 Brassica carinata HOM05D002144 ORTHO05D002170 3.4e-13 78.6 109 45.9
Hma1.2p1_1021F.1_g248660 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 3.4e-13 78.6 117 43.6
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 4.5e-13 78.2 117 47.9
FvH4_6g06830 Fragaria vesca HOM05D002144 ORTHO05D002170 4.5e-13 78.2 113 46.0
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 4.5e-13 78.2 113 46.0
Psat6g150920 Pisum sativum HOM05D002144 ORTHO05D002170 4.5e-13 78.2 114 46.5
Zm00001eb016420 Zea mays HOM05D002144 ORTHO05D002170 4.5e-13 78.2 121 42.1
Thhalv10029065m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 5.9e-13 77.8 118 42.4
Sp6g02660 Schrenkiella parvula HOM05D002144 ORTHO05D002170 5.9e-13 77.8 118 42.4
Actinidia19775 Actinidia chinensis HOM05D002144 ORTHO05D002170 7.6e-13 77.4 114 44.7
Glyma.19G232400 Glycine max HOM05D002144 ORTHO05D002170 7.6e-13 77.4 97 50.5
A09p02140 Brassica napus HOM05D002144 ORTHO05D002170 1.0e-12 77.0 109 44.0
Atru.chr2.81 Acer truncatum HOM05D002144 ORTHO05D002170 1.3e-12 76.6 115 45.2
Duzib128G0499 Durio zibethinus HOM05D002144 ORTHO05D002170 1.3e-12 76.6 99 47.5
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 1.3e-12 76.6 129 42.6
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.3e-12 76.6 97 48.5
Duzib177G0824 Durio zibethinus HOM05D002144 ORTHO05D002170 2.2e-12 75.9 99 47.5
RcHm_v2.0_Chr3g0456211 Rosa chinensis HOM05D002144 ORTHO05D002170 2.2e-12 75.9 119 42.9
TWI56G1061 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 2.2e-12 75.9 99 47.5
arahy.Tifrunner.gnm1.ann1.1G1J9V Arachis hypogaea HOM05D002144 ORTHO05D002170 2.9e-12 75.5 109 46.8
Phvul.006G089000 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 2.9e-12 75.5 116 45.7
Aqoxy5G00761 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 3.8e-12 75.1 106 46.2
Gohir.A13G174700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.8e-12 75.1 116 42.2
Gohir.D13G180500 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.8e-12 75.1 116 42.2
Gorai.013G205900 Gossypium raimondii HOM05D002144 ORTHO05D002170 3.8e-12 75.1 116 42.2
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 3.8e-12 75.1 117 44.4
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 3.8e-12 75.1 110 43.6
Lalb_Chr18g0045821 Lupinus albus HOM05D002144 ORTHO05D002170 5.0e-12 74.7 116 44.8
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 5.0e-12 74.7 120 44.2
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 5.0e-12 74.7 120 44.2
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 5.0e-12 74.7 120 44.2
VMungo0720G1086 Vigna mungo HOM05D002144 ORTHO05D002170 5.0e-12 74.7 117 41.9
arahy.Tifrunner.gnm1.ann1.FS7ZHJ Arachis hypogaea HOM05D002144 ORTHO05D002170 6.5e-12 74.3 97 49.5
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 6.5e-12 74.3 120 44.2
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 6.5e-12 74.3 106 48.1
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 8.5e-12 73.9 117 44.4
Gorai.007G341000 Gossypium raimondii HOM05D002144 ORTHO05D002170 8.5e-12 73.9 117 43.6
A03p30880 Brassica napus HOM05D002144 ORTHO05D002170 1.1e-11 73.6 105 44.8
BraA03t12265Z Brassica rapa HOM05D002144 ORTHO05D002170 1.1e-11 73.6 105 44.8
Gohir.D11G309100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.1e-11 73.6 117 43.6
Sabra05G0029700 Salix brachista HOM05D002144 ORTHO05D002170 1.1e-11 73.6 106 46.2
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 1.1e-11 73.6 120 45.0
THA.LOC104805892 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 1.1e-11 73.6 94 51.1
Medtr1g083440 Medicago truncatula HOM05D002144 ORTHO05D002170 1.4e-11 73.2 98 44.9
Sabra13G0012800 Salix brachista HOM05D002144 ORTHO05D002170 1.4e-11 73.2 121 39.7
TPR.G17717 Trifolium pratense HOM05D002144 ORTHO05D002170 1.4e-11 73.2 111 42.3
VMungo0540G2203 Vigna mungo HOM05D002144 ORTHO05D002170 1.4e-11 73.2 116 44.0
Medtr7g112860 Medicago truncatula HOM05D002144 ORTHO05D002170 1.9e-11 72.8 109 45.0
Carub.0002s0799 Capsella rubella HOM05D002144 ORTHO05D002170 2.5e-11 72.4 124 38.7
arahy.Tifrunner.gnm1.ann1.DGZF1S Arachis hypogaea HOM05D002144 ORTHO05D002170 3.2e-11 72.0 111 41.4
arahy.Tifrunner.gnm1.ann1.TTE3SB Arachis hypogaea HOM05D002144 ORTHO05D002170 3.2e-11 72.0 111 41.4
CANSAT56G3315 Cannabis sativa HOM05D002144 ORTHO05D002170 3.2e-11 72.0 99 46.5
CARHR002160 Cardamine hirsuta HOM05D002144 ORTHO05D002170 3.2e-11 72.0 124 39.5
Lsat_1_v5_gn_7_71780 Lactuca sativa HOM05D002144 ORTHO05D002170 3.2e-11 72.0 116 42.2
HanXRQChr03g0074691 Helianthus annuus HOM05D002144 ORTHO05D002170 4.2e-11 71.6 112 44.6
Os03g0342900 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 4.2e-11 71.6 112 43.8
BcaB05g23660 Brassica carinata HOM05D002144 ORTHO05D002170 5.5e-11 71.2 117 43.6
Dinv40350 Davidia involucrata HOM05D002144 ORTHO05D002170 5.5e-11 71.2 105 45.7
Psat3g011320 Pisum sativum HOM05D002144 ORTHO05D002170 5.5e-11 71.2 97 47.4
BcaB01g02012 Brassica carinata HOM05D002144 ORTHO05D002170 7.2e-11 70.9 121 41.3
BolC9t53152H Brassica oleracea HOM05D002144 ORTHO05D002170 7.2e-11 70.9 90 48.9
Ca_09348_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 7.2e-11 70.9 96 46.9
Lj5g0009461 Lotus japonicus HOM05D002144 ORTHO05D002170 7.2e-11 70.9 98 46.9
Nitab4.5_0005982g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 7.2e-11 70.9 111 46.8
Peaxi162Scf00037g01327 Petunia axillaris HOM05D002144 ORTHO05D002170 7.2e-11 70.9 118 43.2
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 9.4e-11 70.5 103 41.7
AT1G56220 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 9.4e-11 70.5 126 38.9
C09p02240 Brassica napus HOM05D002144 ORTHO05D002170 9.4e-11 70.5 98 45.9
CARHR289760 Cardamine hirsuta HOM05D002144 ORTHO05D002170 9.4e-11 70.5 125 38.4
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 9.4e-11 70.5 83 50.6
THA.LOC104820752 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 9.4e-11 70.5 105 45.7
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 1.2e-10 70.1 117 41.9
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 1.2e-10 70.1 117 41.9
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.2e-10 70.1 99 45.5
Nitab4.5_0007800g0010 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.2e-10 70.1 99 45.5
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 1.6e-10 69.7 105 44.8
Actinidia21500 Actinidia chinensis HOM05D002144 ORTHO05D002170 2.1e-10 69.3 90 46.7
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 2.1e-10 69.3 116 42.2
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 2.1e-10 69.3 118 39.8
PGR083G0389 Punica granatum HOM05D002144 ORTHO05D002170 2.1e-10 69.3 97 44.3
Zm00001eb394970 Zea mays HOM05D002144 ORTHO05D002170 2.1e-10 69.3 104 41.3
MSTRG.5114 Avicennia marina HOM05D002144 ORTHO05D002170 2.7e-10 68.9 128 39.8
BolC3t21612H Brassica oleracea HOM05D002144 ORTHO05D002170 2.7e-10 68.9 113 43.4
FAN09G2251 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.6e-10 68.6 94 47.9
Potri.005G024250 Populus trichocarpa HOM05D002144 ORTHO05D002170 3.6e-10 68.6 97 49.5
CiPaw.08G161100 Carya illinoinensis HOM05D002144 ORTHO05D002170 4.6e-10 68.2 118 39.8
HanXRQChr11g0339851 Helianthus annuus HOM05D002144 ORTHO05D002170 4.6e-10 68.2 116 40.5
MD12G1212000 Malus domestica HOM05D002144 ORTHO05D002170 4.6e-10 68.2 133 37.6
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 7.9e-10 67.4 103 41.7
Sed0007798 Sechium edule HOM05D002144 ORTHO05D002170 7.9e-10 67.4 113 42.5
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.0e-09 67.0 97 45.4
C03p37650 Brassica napus HOM05D002144 ORTHO05D002170 1.0e-09 67.0 98 44.9
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 1.0e-09 67.0 120 40.8
BolC3t16055H Brassica oleracea HOM05D002144 ORTHO05D002170 1.0e-09 67.0 98 44.9
Migut.N02089 Erythranthe guttata HOM05D002144 ORTHO05D002170 1.0e-09 67.0 99 44.4
Gohir.A11G294400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.0e-09 67.0 100 45.0
MSTRG.27979 Avicennia marina HOM05D002144 ORTHO05D002170 1.4e-09 66.6 120 40.0
BcaC01g01556 Brassica carinata HOM05D002144 ORTHO05D002170 1.8e-09 66.2 101 44.6
MELO3C004219.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.8e-09 66.2 119 37.0
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.8e-09 66.2 103 40.8
Aa31LG2G11660 Aethionema arabicum HOM05D002144 ORTHO05D002170 2.3e-09 65.9 98 44.9
C03p93120 Brassica napus HOM05D002144 ORTHO05D002170 2.3e-09 65.9 101 43.6
AL1G65760 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 3.0e-09 65.5 101 44.6
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 3.0e-09 65.5 92 46.7
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 3.0e-09 65.5 92 46.7
BraA09t35863Z Brassica rapa HOM05D002144 ORTHO05D002170 3.0e-09 65.5 91 44.0
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 3.9e-09 65.1 102 45.1
SGA_v2.0_scaffold81G26097 Striga asiatica HOM05D002144 ORTHO05D002170 3.9e-09 65.1 98 44.9
BcaC01g06737 Brassica carinata HOM05D002144 ORTHO05D002170 5.1e-09 64.7 97 44.3
MBI19_g39052_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 5.1e-09 64.7 94 45.7
HPP92_006918 Vanilla planifolia HOM05D002144 ORTHO05D002170 6.7e-09 64.3 117 40.2
Nitab4.5_0000041g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.1e-08 63.5 109 42.2
MD04G1198800 Malus domestica HOM05D002144 ORTHO05D002170 1.5e-08 63.2 130 36.2
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 1.5e-08 63.2 122 36.1
CDE11G0597 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 1.9e-08 62.8 116 38.8
Sabra13G0016800 Salix brachista HOM05D002144 ORTHO05D002170 1.9e-08 62.8 100 41.0
Lsat_1_v5_gn_9_124660 Lactuca sativa HOM05D002144 ORTHO05D002170 2.5e-08 62.4 113 40.7
HPP92_013722 Vanilla planifolia HOM05D002144 ORTHO05D002170 2.5e-08 62.4 119 37.0
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 3.3e-08 62.0 105 41.0
Sed0012165 Sechium edule HOM05D002144 ORTHO05D002170 5.7e-08 61.2 117 35.9
HPP92_011851 Vanilla planifolia HOM05D002144 ORTHO05D002170 5.7e-08 61.2 117 40.2
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 7.4e-08 60.8 104 41.3
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 7.4e-08 60.8 104 41.3
DCAR_003365 Daucus carota HOM05D002144 ORTHO05D002170 1.3e-07 60.1 96 43.8
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 1.3e-07 60.1 116 38.8
Hma1.2p1_0472F.1_g159670 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.8e-07 58.9 118 39.0
SalBow7G0387 Salvia bowleyana HOM05D002144 ORTHO05D002170 2.8e-07 58.9 118 37.3
Oeu017267.1 Olea europaea HOM05D002144 ORTHO05D002170 6.3e-07 57.8 128 37.5
Pp3c20_21690 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.4e-06 56.6 133 37.6
Eucgr.H04545 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.8e-06 56.2 123 35.0
Cc02_g34280 Coffea canephora HOM05D002144 ORTHO05D002170 2.4e-06 55.8 109 39.4
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 3.1e-06 55.5 103 39.8
Cpa.g.sc327.9 Carica papaya HOM05D002144 ORTHO05D002170 5.3e-06 54.7 97 41.2
SGA_v2.0_scaffold80G25892 Striga asiatica HOM05D002144 ORTHO05D002170 5.3e-06 54.7 77 44.2
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 6.9e-06 54.3 74 47.3
CDE05G2734 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 6.9e-06 54.3 68 47.1
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 6.9e-06 54.3 96 40.6
Pp3c10_24000 Physcomitrium patens HOM05D003630 ORTHO05D004151 6.9e-06 54.3 135 36.3
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 9.1e-06 53.9 101 38.6
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 9.1e-06 53.9 99 39.4
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 9.1e-06 53.9 99 39.4
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 9.1e-06 53.9 99 39.4
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 9.1e-06 53.9 50 52.0


User provided reference genes

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