Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.0e-116 423.3 205 100.0
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 5.8e-67 258.1 157 75.8
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 5.8e-67 258.1 210 63.3
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.0e-66 257.3 148 76.4
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 1.3e-66 256.9 144 79.2
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 2.2e-66 256.1 144 79.2
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 3.8e-66 255.4 144 80.6
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 6.5e-66 254.6 171 69.0
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 6.5e-66 254.6 144 79.9
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 8.4e-66 254.2 144 79.9
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.4e-65 253.4 144 78.5
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 1.4e-65 253.4 150 72.7
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 1.4e-65 253.4 150 76.0
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.5e-65 252.7 144 78.5
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 4.2e-65 251.9 144 76.4
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 4.2e-65 251.9 144 79.2
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 4.2e-65 251.9 150 74.7
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 4.2e-65 251.9 150 74.7
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 7.1e-65 251.1 144 77.8
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 9.3e-65 250.8 155 71.6
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 9.3e-65 250.8 171 68.4
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 9.3e-65 250.8 171 68.4
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 9.3e-65 250.8 144 77.8
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 9.3e-65 250.8 212 59.4
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.2e-64 250.4 143 79.7
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.6e-64 250.0 198 61.6
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.1e-64 249.6 144 77.8
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.1e-64 249.6 144 76.4
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 4.6e-64 248.4 144 75.0
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 4.6e-64 248.4 139 79.1
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 7.9e-64 247.7 144 77.1
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 7.9e-64 247.7 144 76.4
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.0e-63 247.3 190 65.3
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 1.0e-63 247.3 139 78.4
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 1.3e-63 246.9 144 75.7
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 2.3e-63 246.1 207 59.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 2.3e-63 246.1 149 75.2
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.0e-63 245.7 144 74.3
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 5.1e-63 245.0 149 74.5
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.1e-62 243.8 155 69.0
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 1.1e-62 243.8 140 76.4
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.1e-62 243.8 144 74.3
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.5e-62 242.7 155 69.7
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.5e-62 242.7 144 75.0
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 4.3e-62 241.9 144 75.0
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 4.3e-62 241.9 149 73.8
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 4.3e-62 241.9 140 77.1
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 5.7e-62 241.5 197 61.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 5.7e-62 241.5 138 77.5
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 5.7e-62 241.5 203 61.1
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.4e-62 241.1 139 75.5
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.3e-61 240.4 146 73.3
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 1.3e-61 240.4 139 77.7
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.6e-61 240.0 144 75.0
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.8e-61 239.2 144 74.3
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.8e-61 239.2 144 74.3
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.8e-61 239.2 144 74.3
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 3.7e-61 238.8 201 60.7
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 3.7e-61 238.8 144 74.3
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 3.7e-61 238.8 147 74.1
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 4.8e-61 238.4 144 74.3
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 6.3e-61 238.0 139 74.8
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 8.2e-61 237.7 147 71.4
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 1.1e-60 237.3 162 67.3
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 1.8e-60 236.5 144 72.9
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 2.4e-60 236.1 144 74.3
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 2.4e-60 236.1 147 70.7
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 3.1e-60 235.7 144 73.6
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 4.1e-60 235.3 189 57.1
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 4.1e-60 235.3 139 74.1
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 4.1e-60 235.3 148 70.9
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 1.2e-59 233.8 144 72.9
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 1.2e-59 233.8 144 72.9
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 2.0e-59 233.0 144 72.2
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 2.0e-59 233.0 149 71.8
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.3e-58 230.3 144 74.3
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-58 230.3 144 74.3
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-58 230.3 144 72.2
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 3.8e-58 228.8 144 70.1
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 1.4e-57 226.9 150 68.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.9e-57 226.5 165 65.5
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 4.2e-57 225.3 144 72.9
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 6.7e-55 218.0 141 70.2
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.5e-54 216.1 139 67.6
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 2.2e-53 213.0 156 66.0
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 4.8e-53 211.8 122 77.9
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 6.3e-53 211.5 147 61.2
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.4e-52 210.3 128 73.4
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.4e-52 209.5 203 54.2
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.4e-52 209.5 203 54.2
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 3.1e-52 209.1 147 61.9
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.1e-52 209.1 151 65.6
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 5.3e-52 208.4 148 65.5
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.2e-51 207.2 122 75.4
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 4.5e-51 205.3 169 59.2
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 3.2e-49 199.1 122 71.3
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 5.5e-49 198.4 122 70.5
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.6e-48 196.8 127 70.9
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 3.9e-47 192.2 117 73.5
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 1.1e-46 190.7 130 66.2
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 2.0e-46 189.9 145 61.4
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 2.2e-45 186.4 153 54.2
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.1e-44 182.6 113 71.7
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 3.1e-44 182.6 137 60.6
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 4.1e-44 182.2 141 61.0
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.0e-42 177.6 151 56.3
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 1.7e-42 176.8 144 58.3
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 2.9e-42 176.0 113 69.9
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 8.5e-42 174.5 108 70.4
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.1e-41 174.1 106 74.5
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.9e-41 173.3 138 54.3
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 3.2e-41 172.6 99 74.7
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 7.2e-41 171.4 110 68.2
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 1.2e-40 170.6 133 55.6
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.6e-40 170.2 111 68.5
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.0e-39 166.0 98 72.4
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 6.7e-39 164.9 121 62.8
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.7e-39 164.9 121 62.8
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.7e-37 160.2 99 70.7
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.2e-37 159.8 139 54.7
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 9.1e-36 154.5 103 62.1
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 6.5e-34 148.3 139 54.7
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 1.7e-29 133.7 83 71.1
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 5.9e-27 125.2 118 44.9
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.0e-26 124.4 115 53.0
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 2.5e-25 119.8 72 73.6
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 2.5e-25 119.8 72 73.6
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 9.4e-25 117.9 75 66.7
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.6e-24 117.1 72 72.2
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 2.1e-24 116.7 72 69.4
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 5.2e-23 112.1 68 70.6
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.6e-22 109.8 64 76.6
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.3e-21 107.5 85 60.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.7e-21 105.9 87 55.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.8e-20 103.6 90 51.1
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.3e-18 97.4 64 65.6
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 3.8e-18 95.9 60 68.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 6.5e-18 95.1 61 65.6
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 7.2e-17 91.7 62 66.1
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.1e-16 90.1 80 50.0
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 1.5e-14 84.0 78 53.8
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.9e-09 67.0 49 59.2
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 8.0e-08 61.6 33 75.8
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 5.7e-06 55.5 89 37.1


User provided reference genes

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