Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.4e-153 546.2 263 100.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 8.8e-84 314.3 259 59.1
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 9.7e-83 310.8 260 58.5
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.2e-82 309.7 259 57.9
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.2e-82 307.8 260 56.2
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 8.2e-82 307.8 261 59.4
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 4.5e-80 302.0 260 56.5
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 3.8e-79 298.9 260 56.9
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.1e-78 297.4 256 57.8
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.5e-78 297.0 254 57.5
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 3.2e-78 295.8 260 55.8
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.2e-78 295.8 261 55.9
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 3.2e-78 295.8 260 56.9
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 5.5e-78 295.0 255 56.9
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 7.2e-78 294.7 219 61.2
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 9.4e-78 294.3 261 54.0
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.2e-77 293.9 261 56.3
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 1.6e-77 293.5 259 54.1
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 2.1e-77 293.1 259 56.4
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.7e-77 292.7 262 56.1
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 4.7e-77 292.0 259 56.4
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 6.1e-77 291.6 252 56.7
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 8.0e-77 291.2 259 54.1
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.0e-76 290.8 257 56.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.0e-76 290.8 259 55.6
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.3e-76 289.7 259 55.6
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 4.0e-76 288.9 260 55.8
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 4.0e-76 288.9 254 55.9
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 6.8e-76 288.1 259 53.7
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 8.8e-76 287.7 256 55.9
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 8.8e-76 287.7 253 56.1
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.2e-75 287.3 253 54.5
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 2.6e-75 286.2 253 55.3
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.4e-75 285.8 264 55.7
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 3.4e-75 285.8 273 53.1
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 3.4e-75 285.8 262 55.7
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 7.5e-75 284.6 250 56.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.5e-75 284.6 221 57.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.7e-74 282.3 253 54.9
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.7e-74 282.3 261 52.5
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 6.3e-74 281.6 257 56.0
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 8.3e-74 281.2 259 52.9
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.1e-73 280.8 253 54.9
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.1e-73 280.8 253 54.9
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.1e-73 280.8 243 56.8
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.4e-73 280.4 259 53.7
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.8e-73 280.0 221 53.8
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 4.1e-73 278.9 221 59.3
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 5.4e-73 278.5 259 52.9
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 9.1e-73 277.7 261 54.8
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.6e-72 276.9 297 48.1
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.0e-72 276.6 259 54.4
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.5e-72 275.8 235 56.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.5e-72 275.8 235 56.2
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 4.5e-72 275.4 254 51.2
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 7.7e-72 274.6 260 53.8
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.0e-71 274.2 255 53.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.0e-71 274.2 260 52.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.3e-71 273.9 259 51.0
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.3e-71 273.9 259 52.9
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.9e-71 272.7 264 51.5
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.9e-71 272.7 261 53.6
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 3.8e-71 272.3 261 52.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.8e-71 272.3 261 52.9
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.8e-71 272.3 261 52.9
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 5.0e-71 271.9 280 48.9
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 5.0e-71 271.9 259 51.4
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 6.5e-71 271.6 261 52.5
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 8.6e-71 271.2 240 56.2
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.9e-70 270.0 258 51.9
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.2e-70 268.9 264 52.3
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 9.5e-70 267.7 259 52.5
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-69 267.3 273 49.5
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.1e-69 266.5 259 52.1
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 3.6e-69 265.8 237 53.6
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 6.1e-69 265.0 256 52.7
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 8.0e-69 264.6 259 51.4
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.0e-69 264.6 254 53.1
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 8.0e-69 264.6 264 48.1
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.8e-68 261.5 251 53.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-67 260.8 211 56.4
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.6e-67 259.6 256 51.2
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 5.7e-67 258.5 240 54.2
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 5.7e-67 258.5 200 59.0
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 2.2e-66 256.5 256 53.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.3e-66 255.0 257 51.4
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 5.9e-64 248.4 298 44.3
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.7e-63 246.9 229 51.1
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.8e-63 245.7 229 50.2
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.0e-63 245.4 200 57.0
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 5.0e-63 245.4 324 40.7
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.1e-62 244.2 220 55.0
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.5e-62 243.8 230 52.6
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 2.5e-62 243.0 238 48.7
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 4.3e-62 242.3 278 44.2
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 7.3e-62 241.5 274 47.8
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.1e-61 240.0 291 46.0
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 2.8e-61 239.6 259 46.3
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 4.4e-59 232.3 225 48.9
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 7.5e-59 231.5 214 52.8
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.4e-57 227.3 266 45.9
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.4e-57 227.3 180 57.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 5.0e-55 218.8 183 55.2
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 4.3e-54 215.7 230 49.6
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 6.2e-53 211.8 301 41.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.4e-52 210.7 226 41.6
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 6.8e-52 208.4 214 43.0
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.2e-50 203.4 251 45.4
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.4e-49 199.9 248 43.5
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.9e-46 190.3 183 51.4
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 7.3e-46 188.3 183 53.0
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 4.7e-45 185.7 187 51.3
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 8.1e-45 184.9 166 57.8
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 6.8e-44 181.8 170 52.9
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 9.9e-43 177.9 176 47.7
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.9e-41 173.7 190 44.7
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.5e-40 169.5 151 57.0
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 4.6e-40 169.1 214 43.0
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.7e-39 167.2 216 41.2
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 5.1e-39 165.6 141 54.6
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-38 164.1 138 56.5
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.9e-38 163.7 144 47.9
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.5e-38 161.4 225 40.4
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.1e-36 156.4 163 50.3
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.8e-35 152.1 153 52.9
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 3.5e-32 142.9 143 49.7
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 7.3e-30 135.2 372 26.3
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 9.6e-30 134.8 116 54.3
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.2e-29 134.4 294 30.6
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.4e-28 131.0 128 52.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.4e-28 130.2 202 36.1
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.6e-27 126.7 126 46.8
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.6e-27 126.7 252 30.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.6e-27 126.7 117 50.4
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-24 117.5 155 40.6
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 7.8e-24 115.2 96 55.2
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-23 114.8 86 61.6
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.7e-23 114.0 86 61.6
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.3e-23 113.6 148 41.2
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.5e-22 110.9 86 60.5
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.5e-22 110.9 86 59.3
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 2.5e-22 110.2 75 61.3
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 3.1e-20 103.2 75 57.3
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 5.8e-19 99.0 69 62.3
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 7.6e-19 98.6 80 57.5
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.9e-19 98.2 240 32.5
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.2e-17 93.2 67 53.7
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.4e-17 92.4 67 53.7
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.3e-17 91.7 67 52.2
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 1.8e-12 77.4 58 60.3
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-11 74.7 88 47.7
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.9e-09 67.4 82 47.6
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 5.5e-09 65.9 42 66.7
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.1e-08 63.9 59 45.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.6e-08 62.8 83 45.8
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 1.8e-07 60.8 82 43.9
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.3e-07 60.5 68 50.0
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 5.1e-07 59.3 44 63.6
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.5e-06 57.0 64 43.8


User provided reference genes

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