Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 7.0e-190 667.2 344 100.0
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.5e-112 410.2 329 61.4
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 3.4e-112 409.1 325 62.2
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 7.7e-112 407.9 323 62.2
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 1.4e-110 403.7 343 59.8
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 2.1e-109 399.8 307 63.2
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 3.6e-109 399.1 326 61.3
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 7.9e-109 397.9 307 62.2
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.7e-106 389.0 285 63.9
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 6.3e-106 388.3 330 59.1
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 8.2e-106 387.9 308 61.7
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 9.1e-105 384.4 326 59.5
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 2.0e-104 383.3 284 65.1
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 2.0e-104 383.3 294 63.3
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 2.9e-103 379.4 336 57.4
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 3.8e-103 379.0 318 61.9
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 5.0e-103 378.6 322 59.9
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 1.9e-102 376.7 285 64.6
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 4.2e-102 375.6 287 63.1
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 5.5e-102 375.2 345 54.5
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 5.5e-102 375.2 295 61.7
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 7.2e-102 374.8 315 57.5
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.7e-101 372.9 324 58.3
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 4.7e-101 372.1 341 55.1
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 6.1e-101 371.7 313 59.4
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 1.8e-100 370.2 276 66.7
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 3.9e-100 369.0 293 63.8
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.9e-100 369.0 332 56.0
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 5.1e-100 368.6 311 57.2
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 5.1e-100 368.6 311 57.2
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 6.7e-100 368.2 310 57.7
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 6.7e-100 368.2 345 54.8
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.6e-99 366.3 332 55.4
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 5.7e-99 365.2 329 55.3
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 1.7e-98 363.6 291 58.8
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 2.2e-98 363.2 341 53.7
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 4.8e-98 362.1 328 57.6
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 4.8e-98 362.1 318 56.3
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.1e-97 360.9 293 61.4
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 1.1e-97 360.9 331 55.3
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 2.4e-97 359.8 343 52.5
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 7.0e-97 358.2 286 60.8
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 7.0e-97 358.2 318 55.7
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.2e-96 357.5 291 60.5
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.2e-96 357.5 323 54.5
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.0e-96 356.7 367 50.7
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 2.0e-96 356.7 341 56.0
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 3.5e-96 355.9 302 58.9
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 4.5e-96 355.5 355 50.1
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 5.9e-96 355.1 303 58.1
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.0e-95 354.4 333 56.8
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 1.3e-95 354.0 305 58.0
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 2.9e-95 352.8 333 56.8
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 2.9e-95 352.8 296 57.1
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 8.5e-95 351.3 296 56.8
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 1.1e-94 350.9 318 54.7
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.1e-94 350.9 308 58.8
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.5e-94 350.5 305 60.0
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.5e-94 349.7 303 60.7
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.2e-94 349.4 300 58.0
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 3.2e-94 349.4 309 58.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.2e-94 349.0 327 54.4
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 5.5e-94 348.6 337 52.8
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 5.5e-94 348.6 299 60.5
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 7.2e-94 348.2 294 57.8
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 9.4e-94 347.8 304 59.2
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.2e-93 347.4 289 58.8
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.6e-93 347.1 318 56.9
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 3.6e-93 345.9 289 58.8
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 6.1e-93 345.1 338 55.9
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 4.0e-92 342.4 346 50.3
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 4.0e-92 342.4 289 57.1
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 6.7e-92 341.7 302 58.6
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 2.6e-91 339.7 347 52.4
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 2.6e-91 339.7 347 52.4
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 6.3e-90 335.1 288 54.9
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 8.2e-90 334.7 280 58.2
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 3.1e-89 332.8 305 55.1
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 4.1e-89 332.4 348 50.0
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 7.0e-89 331.6 320 51.6
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 2.7e-88 329.7 313 51.1
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 7.7e-88 328.2 315 54.9
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.3e-87 327.4 275 56.4
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.5e-86 323.9 288 54.9
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.6e-85 320.5 264 56.1
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 3.6e-85 319.3 294 52.4
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 2.3e-84 316.6 263 59.7
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 2.7e-80 303.1 292 54.1
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.0e-79 301.2 291 51.5
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 2.9e-79 299.7 294 50.3
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.5e-78 296.6 347 47.6
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 4.2e-78 295.8 296 50.3
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 5.5e-78 295.4 309 52.4
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 1.0e-76 291.2 248 60.1
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.3e-74 284.3 290 51.7
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 2.0e-72 276.9 311 46.0
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 4.3e-70 269.2 230 58.3
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 4.3e-70 269.2 287 48.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.0e-68 264.6 294 47.6
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 9.2e-57 224.9 233 48.9
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 9.5e-54 214.9 214 54.2
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 2.3e-52 210.3 174 61.5
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 1.2e-51 208.0 330 39.7
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 2.0e-51 207.2 333 40.2
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 7.5e-51 205.3 330 39.7
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 6.0e-48 195.7 191 57.1
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 7.8e-48 195.3 209 49.8
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 2.3e-47 193.7 248 44.8
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 6.6e-47 192.2 313 38.0
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 7.3e-46 188.7 232 47.8
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 2.1e-45 187.2 279 40.1
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 2.8e-45 186.8 167 53.9
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.2e-42 177.2 288 39.2
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.1e-41 174.9 280 37.9
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 5.4e-41 172.6 166 53.0
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.3e-39 167.9 114 64.9
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 4.3e-38 162.9 119 57.1
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 4.7e-37 159.5 110 63.6
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 3.4e-35 153.3 105 63.8
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 3.3e-30 136.7 186 43.5
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 5.3e-28 129.4 131 55.7
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 3.8e-26 123.2 160 48.1
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.1e-22 111.7 112 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 3.3e-22 110.2 201 35.3
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.1e-20 103.6 63 69.8
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 1.3e-18 98.2 53 71.7
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.2e-18 97.4 63 60.3
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 1.9e-17 94.4 63 55.6
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 2.4e-17 94.0 66 62.1
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 3.2e-17 93.6 55 72.7
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.1e-16 90.9 65 61.5
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 1.6e-13 81.3 91 42.9
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 2.1e-13 80.9 95 42.1
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 4.0e-12 76.6 52 65.4
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.4e-09 68.2 60 53.3


User provided reference genes

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