Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 9.5e-161 570.1 280 100.0
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 2.0e-70 270.0 228 60.1
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 2.6e-70 269.6 227 59.9
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 4.5e-70 268.9 226 59.7
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.9e-70 268.5 226 58.8
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 1.0e-69 267.7 229 58.1
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.3e-69 267.3 229 58.5
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 3.8e-69 265.8 226 58.0
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 3.8e-69 265.8 227 59.9
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 8.5e-69 264.6 226 59.7
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.5e-68 263.8 226 58.8
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.9e-68 263.5 248 56.0
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.9e-68 263.5 226 58.0
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.9e-68 263.5 226 58.0
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.4e-68 261.2 226 58.8
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.2e-67 260.8 226 59.3
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 2.1e-67 260.0 238 56.7
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.7e-67 259.6 226 57.1
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 3.6e-67 259.2 223 59.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 3.6e-67 259.2 226 58.0
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.6e-67 259.2 228 57.9
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 6.1e-67 258.5 229 58.1
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.0e-66 257.7 226 60.2
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.0e-66 257.7 226 60.2
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 1.4e-66 257.3 226 58.4
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 1.4e-66 257.3 227 57.3
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.8e-66 256.9 226 56.6
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.8e-66 256.9 221 59.7
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.0e-66 256.1 228 57.9
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.0e-66 256.1 219 59.4
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.0e-66 256.1 226 60.2
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 3.0e-66 256.1 228 56.6
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.2e-66 255.4 226 56.6
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 5.2e-66 255.4 226 56.6
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 5.2e-66 255.4 226 56.2
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.8e-66 254.6 221 59.7
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 8.8e-66 254.6 212 60.4
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 8.8e-66 254.6 227 57.7
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.2e-65 254.2 224 58.0
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.2e-65 254.2 226 56.2
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.2e-65 254.2 260 52.3
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.2e-65 254.2 245 55.1
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.5e-65 253.8 231 56.3
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.4e-65 252.7 226 55.8
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 3.4e-65 252.7 226 55.3
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 4.4e-65 252.3 227 57.7
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.4e-65 252.3 213 60.6
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 5.7e-65 251.9 213 59.2
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 7.5e-65 251.5 242 54.5
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.3e-64 250.8 242 54.5
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.3e-64 250.8 226 54.4
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 1.3e-64 250.8 225 58.2
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 2.2e-64 250.0 214 58.4
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 3.7e-64 249.2 214 58.9
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 3.7e-64 249.2 191 64.4
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 4.8e-64 248.8 159 72.3
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.8e-64 248.8 226 55.3
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 6.3e-64 248.4 226 54.4
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 1.1e-63 247.7 226 54.4
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.4e-63 247.3 226 54.0
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.8e-63 246.9 226 56.2
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.4e-63 246.5 229 54.1
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.4e-63 246.5 228 54.8
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.1e-63 246.1 226 55.8
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.1e-63 246.1 226 55.8
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 4.1e-63 245.7 226 55.3
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.1e-63 245.7 190 61.6
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 5.4e-63 245.4 220 58.2
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 7.0e-63 245.0 226 54.9
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 9.1e-63 244.6 226 53.1
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 9.1e-63 244.6 213 54.5
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.2e-62 244.2 226 54.4
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.2e-62 244.2 226 54.0
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 2.0e-62 243.4 231 54.1
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.0e-61 241.1 239 52.7
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.7e-61 240.4 159 70.4
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 2.9e-61 239.6 225 55.1
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 3.8e-61 239.2 223 55.2
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.5e-60 237.3 226 54.0
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.5e-60 237.3 193 60.6
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.9e-60 236.9 225 54.7
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 9.4e-60 234.6 228 53.5
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 4.7e-59 232.3 165 67.3
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 5.2e-58 228.8 157 66.2
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 5.2e-58 228.8 226 52.2
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 1.2e-57 227.6 157 66.9
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.2e-57 227.6 157 65.6
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.5e-57 227.3 166 63.3
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.6e-57 226.5 236 50.0
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 5.7e-57 225.3 178 59.6
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 7.5e-57 224.9 176 60.8
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 9.8e-57 224.6 227 52.4
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 9.8e-57 224.6 178 59.6
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.3e-56 224.2 143 71.3
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 1.7e-56 223.8 165 63.0
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 2.8e-56 223.0 178 59.0
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 8.3e-56 221.5 223 51.1
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 2.4e-55 219.9 157 65.0
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 3.1e-55 219.5 144 70.1
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.6e-54 217.2 170 61.8
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 7.7e-54 214.9 304 43.4
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 1.7e-53 213.8 143 68.5
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 2.9e-53 213.0 186 57.0
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 2.5e-52 209.9 184 59.2
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.2e-52 209.1 154 63.0
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 6.8e-50 201.8 195 53.8
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 8.9e-50 201.4 187 54.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 2.0e-49 200.3 190 54.2
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.4e-49 199.5 226 46.0
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.2e-48 196.8 144 63.9
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.9e-48 196.4 227 49.3
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.1e-47 194.5 184 56.0
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.4e-47 194.1 233 46.4
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.8e-47 193.7 184 55.4
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 7.8e-46 188.3 141 61.7
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 7.8e-46 188.3 140 64.3
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 1.7e-45 187.2 229 46.3
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 2.3e-45 186.8 154 58.4
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 3.6e-43 179.5 118 65.3
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 6.8e-42 175.3 145 56.6
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.4e-41 172.6 131 62.6
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 3.5e-38 162.9 158 53.2
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.0e-37 161.4 203 46.8
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 1.0e-37 161.4 160 54.4
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 3.0e-37 159.8 188 47.9
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 6.6e-37 158.7 155 53.5
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.9e-36 157.1 133 59.4
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.1e-34 149.8 182 48.4
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.0e-34 149.4 157 50.3
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 2.9e-32 143.3 141 46.8
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 3.2e-31 139.8 176 40.9
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 3.4e-25 119.8 76 73.7
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 4.4e-25 119.4 152 42.8
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 7.8e-22 108.6 73 67.1
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 2.5e-20 103.6 109 49.5
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 2.8e-19 100.1 61 72.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 8.1e-19 98.6 67 62.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 8.4e-16 88.6 103 46.6
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.1e-15 88.2 129 42.6
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 2.1e-14 84.0 99 44.4
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 3.0e-13 80.1 101 51.5
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.6e-13 79.0 110 43.6
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 3.3e-12 76.6 91 45.1
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.3e-12 76.3 101 49.5
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 9.6e-12 75.1 91 44.0
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 3.1e-10 70.1 81 46.9
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 3.1e-10 70.1 81 46.9
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.8e-08 63.2 55 52.7


User provided reference genes

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