Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G311 Amborella trichopoda HOM05D006493 ORTHO05D009864 8.6e-76 287.0 151 100.0
Nn1g10151 Nelumbo nucifera HOM05D006493 ORTHO05D009864 3.5e-69 265.0 150 92.7
Aqoxy1G02970 Aquilegia oxysepala HOM05D006493 ORTHO05D009864 3.0e-68 261.9 150 91.3
Nitab4.5_0000028g0250 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.5e-67 259.6 150 92.0
Zm00001eb436160 Zea mays HOM05D006493 ORTHO05D009864 1.9e-67 259.2 150 90.7
Gorai.001G164600 Gossypium raimondii HOM05D006493 ORTHO05D009864 4.3e-67 258.1 150 90.7
Potri.007G062522 Populus trichocarpa HOM05D006493 ORTHO05D009864 4.3e-67 258.1 150 90.7
SabraMtG0004500 Salix brachista HOM05D006493 ORTHO05D009864 4.3e-67 258.1 150 90.7
Solyc00g125990.1 Solanum lycopersicum HOM05D006493 ORTHO05D009864 4.3e-67 258.1 150 91.3
Solyc00g500314.1 Solanum lycopersicum HOM05D006493 ORTHO05D009864 4.3e-67 258.1 150 91.3
PGSC0003DMG400021388 Solanum tuberosum HOM05D006493 ORTHO05D009864 4.3e-67 258.1 150 91.3
DCAR_028366 Daucus carota HOM05D006493 ORTHO05D009864 1.3e-66 256.5 150 90.7
Lj2C1221T62 Lonicera japonica HOM05D006493 ORTHO05D009864 1.3e-66 256.5 150 90.7
Lj2C1230T74 Lonicera japonica HOM05D006493 ORTHO05D009864 1.3e-66 256.5 150 90.7
RhsimMtG0006700 Rhododendron simsii HOM05D006493 ORTHO05D009864 1.6e-66 256.1 150 90.7
PGR069G0009 Punica granatum HOM05D006493 ORTHO05D009864 2.1e-66 255.8 150 90.0
SalBow1G2520 Salvia bowleyana HOM05D006493 ORTHO05D009864 2.8e-66 255.4 150 90.0
SGA_v2.0_scaffold255G45360 Striga asiatica HOM05D006493 ORTHO05D009864 2.8e-66 255.4 150 90.0
Aa31csc239G90 Aethionema arabicum HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
AT2G07689 Arabidopsis thaliana HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
A04p09370 Brassica napus HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
BolSC28t60313H Brassica oleracea HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
BraSC159t45728Z Brassica rapa HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
BraSC48t46238Z Brassica rapa HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
CARHR283510 Cardamine hirsuta HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
CARHR288180 Cardamine hirsuta HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
Sp3g25780 Schrenkiella parvula HOM05D006493 ORTHO05D009864 4.8e-66 254.6 150 89.3
HanXRQMTg0579071 Helianthus annuus HOM05D006493 ORTHO05D009864 8.1e-66 253.8 150 89.3
Lsat_1_v5_gn_5_28201 Lactuca sativa HOM05D006493 ORTHO05D009864 8.1e-66 253.8 150 89.3
RcHm_v2.0_MTg0498511 Rosa chinensis HOM05D006493 ORTHO05D009864 1.4e-65 253.1 150 88.7
CAN.G1159.4 Capsicum annuum HOM05D006493 ORTHO05D009864 1.8e-65 252.7 150 90.0
Psat7g093520 Pisum sativum HOM05D006493 ORTHO05D009864 3.1e-65 251.9 150 89.3
TPR.G39758 Trifolium pratense HOM05D006493 ORTHO05D009864 3.1e-65 251.9 150 89.3
CsaV3_UNG208130 Cucumis sativus L. HOM05D006493 ORTHO05D009864 5.3e-65 251.1 150 88.0
GSVIVG01007203001 Vitis vinifera HOM05D006493 ORTHO05D009864 9.0e-65 250.4 150 88.7
TWI79G1044 Tripterygium wilfordii HOM05D006493 ORTHO05D009864 1.5e-64 249.6 150 88.0
arahy.Tifrunner.gnm1.ann1.REK9CK Arachis hypogaea HOM05D006493 ORTHO05D009864 2.6e-64 248.8 150 88.0
Lsat_1_v5_gn_0_38180 Lactuca sativa HOM05D006493 ORTHO05D009864 2.6e-64 248.8 150 88.0
LjContig00439g0012697 Lotus japonicus HOM05D006493 ORTHO05D009864 7.6e-64 247.3 150 88.0
LjContig00439g0026284 Lotus japonicus HOM05D006493 ORTHO05D009864 7.6e-64 247.3 150 88.0
arahy.Tifrunner.gnm1.ann1.G2UG47 Arachis hypogaea HOM05D006493 ORTHO05D009864 1.3e-63 246.5 150 87.3
arahy.Tifrunner.gnm1.ann1.PL6HV0 Arachis hypogaea HOM05D006493 ORTHO05D009864 1.3e-63 246.5 150 87.3
unitig_87.g27995 Utricularia gibba HOM05D006493 ORTHO05D009864 1.3e-63 246.5 150 87.3
Ah.10g028490 Amaranthus hybridus HOM05D006493 ORTHO05D009864 2.2e-63 245.7 150 86.7
Peaxi162Scf00286g00018 Petunia axillaris HOM05D006493 ORTHO05D009864 4.6e-61 238.0 142 90.1
HanXRQChr07g0188931 Helianthus annuus HOM05D006493 ORTHO05D009864 6.0e-61 237.7 150 85.3
HanXRQChr07g0188941 Helianthus annuus HOM05D006493 ORTHO05D009864 6.0e-61 237.7 150 85.3
SHI34943 Sapria himalayana HOM05D006493 ORTHO05D009864 3.9e-60 235.0 146 84.9
Nitab4.5_0000172g1810 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.3e-58 229.9 148 83.8
Nitab4.5_0000172g0060 Nicotiana tabacum HOM05D006493 ORTHO05D009864 2.6e-56 222.2 148 81.8
Nitab4.5_0000085g0150 Nicotiana tabacum HOM05D006493 ORTHO05D009864 5.8e-56 221.1 137 88.3
Lsat_1_v5_gn_1_2660 Lactuca sativa HOM05D006493 ORTHO05D009864 7.6e-56 220.7 134 88.8
Nitab4.5_0008300g0030 Nicotiana tabacum HOM05D006493 ORTHO05D009864 6.4e-55 217.6 150 81.3
Zm00001eb372930 Zea mays HOM05D006493 ORTHO05D009864 6.7e-52 207.6 118 91.5
Zm00001eb384470 Zea mays HOM05D006493 ORTHO05D009864 6.7e-52 207.6 118 91.5
Zm00001eb435510 Zea mays HOM05D006493 ORTHO05D009864 6.7e-52 207.6 118 91.5
Zm00001eb436120 Zea mays HOM05D006493 ORTHO05D009864 6.7e-52 207.6 118 91.5
Nitab4.5_0000055g0330 Nicotiana tabacum HOM05D006493 ORTHO05D009864 9.6e-51 203.8 148 77.0
Nitab4.5_0000172g1540 Nicotiana tabacum HOM05D006493 ORTHO05D009864 4.9e-47 191.4 128 80.5
Sed0007165 Sechium edule HOM05D006493 ORTHO05D009864 3.5e-45 185.3 150 70.7
CDE02G4378 Ceratophyllum demersum HOM05D006493 ORTHO05D009864 2.3e-44 182.6 150 70.7
arahy.Tifrunner.gnm1.ann1.FPLM06 Arachis hypogaea HOM05D006493 ORTHO05D009864 3.9e-44 181.8 150 70.0
arahy.Tifrunner.gnm1.ann1.ZF89K8 Arachis hypogaea HOM05D006493 ORTHO05D009864 9.6e-43 177.2 128 75.0
Nitab4.5_0001506g0070 Nicotiana tabacum HOM05D006493 ORTHO05D009864 1.5e-40 169.9 100 91.0
HanXRQChr16g0507141 Helianthus annuus HOM05D006493 ORTHO05D009864 5.9e-40 167.9 154 66.2
CDE02G4414 Ceratophyllum demersum HOM05D006493 ORTHO05D009864 2.2e-39 166.0 100 89.0
AUR62042325 Chenopodium quinoa HOM05D006493 ORTHO05D009864 1.6e-37 159.8 107 84.1
AUR62042341 Chenopodium quinoa HOM05D006493 ORTHO05D009864 1.6e-37 159.8 107 84.1
HanXRQChr09g0256301 Helianthus annuus HOM05D006493 ORTHO05D009864 7.9e-37 157.5 101 85.1
Thhalv10015951m.g Eutrema salsugineum HOM05D006493 ORTHO05D009864 4.3e-35 151.8 150 62.0
Nitab4.5_0000593g0190 Nicotiana tabacum HOM05D006493 ORTHO05D009864 7.4e-35 151.0 150 61.3
Nitab4.5_0000172g1600 Nicotiana tabacum HOM05D006493 ORTHO05D009864 4.2e-30 135.2 150 57.3
Solyc03g063500.1 Solanum lycopersicum HOM05D006493 ORTHO05D009864 2.6e-24 115.9 68 88.2
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 4.5e-24 115.2 154 40.9
Migut.C00396 Erythranthe guttata HOM05D006493 ORTHO05D009864 1.4e-22 110.2 79 77.2
Hma1.2p1_0110F.1_g052985 Hydrangea macrophylla HOM05D006493 ORTHO05D009864 1.7e-18 96.7 57 91.2
BolSC28t60369H Brassica oleracea HOM05D006493 ORTHO05D009864 1.8e-17 93.2 49 91.8
Lsat_1_v5_gn_3_72900 Lactuca sativa HOM05D006493 ORTHO05D009864 4.1e-17 92.0 100 60.0
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 1.5e-14 83.6 153 35.9
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 1.5e-14 83.6 153 35.9
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 2.5e-14 82.8 153 35.9
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 2.5e-14 82.8 153 35.9
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.5e-14 82.8 153 35.9
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.5e-14 82.8 153 35.9
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.5e-14 82.8 153 35.9
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 5.5e-14 81.6 153 35.9
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 5.5e-14 81.6 153 35.9
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.6e-13 80.1 153 34.6
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.6e-13 80.1 153 34.6
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.6e-13 80.1 153 35.3
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.6e-13 80.1 153 35.3
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.6e-13 80.1 153 35.3
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.6e-13 80.1 153 35.3
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 4.7e-13 78.6 153 34.0
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 4.7e-13 78.6 153 34.0
SEGI_37255 Sequoiadendron giganteum HOM05D000729 ORTHO05D001063 4.7e-13 78.6 153 35.3
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 1.8e-12 76.6 160 34.4
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 4.0e-12 75.5 118 37.3
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-12 75.1 164 33.5
Hund29781 Selenicereus undatus HOM05D006493 ORTHO05D009864 5.7e-11 71.6 43 88.4
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 1.3e-10 70.5 164 32.9
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 1.7e-10 70.1 171 31.6
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 2.2e-10 69.7 145 35.2
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 4.8e-10 68.6 173 31.8
VMungo0643G0001 Vigna mungo HOM05D000729 ORTHO05D001063 4.8e-10 68.6 177 31.1
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 8.2e-10 67.8 179 30.7
VMungo0942G0002 Vigna mungo HOM05D000729 ORTHO05D001063 8.2e-10 67.8 163 32.5
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-09 67.0 145 34.5
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-09 67.0 145 34.5
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-09 67.0 145 34.5
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-09 67.0 145 34.5
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-09 67.0 145 34.5
CSS0022079 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 2.4e-09 66.2 145 34.5
SMO310G0006 Selaginella moellendorffii HOM05D006493 ORTHO05D009864 2.4e-09 66.2 148 37.8
Eucgr.F02010 Eucalyptus grandis HOM05D006493 ORTHO05D009864 3.1e-09 65.9 42 83.3
HanXRQChr00c0349g0574001 Helianthus annuus HOM05D000729 ORTHO05D001063 3.1e-09 65.9 145 33.8
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 3.1e-09 65.9 145 33.8
Lsat_1_v5_gn_3_112740 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-09 65.9 145 33.8
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-09 65.9 145 33.8
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-09 65.9 145 33.8
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 3.1e-09 65.9 145 33.8
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 5.3e-09 65.1 145 33.8
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 5.3e-09 65.1 145 33.8
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 5.3e-09 65.1 145 33.8
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 5.3e-09 65.1 183 30.1
COL.COLO4_07959 Corchorus olitorius HOM05D006493 ORTHO05D009864 9.1e-09 64.3 43 79.1
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.2e-08 63.9 145 33.8
Oeu015132.1 Olea europaea HOM05D000729 ORTHO05D001063 1.2e-08 63.9 145 33.8
arahy.Tifrunner.gnm1.ann1.HJG1UD Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-08 63.5 145 33.1
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-08 63.5 145 33.8
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.6e-08 63.5 145 33.8
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 1.6e-08 63.5 145 33.1
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 1.6e-08 63.5 145 33.1
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 2.7e-08 62.8 145 33.8
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 2.7e-08 62.8 145 33.1
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 4.5e-08 62.0 144 32.6
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 4.5e-08 62.0 145 33.1
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 4.5e-08 62.0 145 33.1
C09p24730 Brassica napus HOM05D000729 ORTHO05D001063 4.5e-08 62.0 145 33.1
BolSC35t60680H Brassica oleracea HOM05D000729 ORTHO05D001063 4.5e-08 62.0 145 33.1
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 4.5e-08 62.0 145 33.1
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 1.7e-07 60.1 132 32.6
BraSC48t46327Z Brassica rapa HOM05D006493 ORTHO05D009864 2.9e-07 59.3 29 93.1
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 2.9e-07 59.3 118 33.9
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 6.5e-07 58.2 151 32.5
Psat5g286120 Pisum sativum HOM05D000729 ORTHO05D001063 6.5e-07 58.2 143 32.2
HanXRQChr00c0634g0576581 Helianthus annuus HOM05D000729 ORTHO05D001063 8.5e-07 57.8 110 34.5
Nitab4.5_0027450g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 8.5e-07 57.8 145 32.4
Nn031s41602 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.9e-06 56.6 141 31.9
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 2.5e-06 56.2 140 32.9
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.5e-06 56.2 141 31.9
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 3.2e-06 55.8 141 31.2
BolSC29t60537H Brassica oleracea HOM05D000729 ORTHO05D001063 4.2e-06 55.5 101 36.6
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 4.2e-06 55.5 118 33.1
CsaV3_UNG208980 Cucumis sativus L. HOM05D000729 ORTHO05D001063 4.2e-06 55.5 141 30.5
Nitab4.5_0012260g0090 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.2e-06 55.5 137 32.8
BolSC49t61130H Brassica oleracea HOM05D000729 ORTHO05D001063 5.5e-06 55.1 110 34.5
Lsat_1_v5_gn_6_37880 Lactuca sativa HOM05D000729 ORTHO05D001063 7.2e-06 54.7 110 33.6


User provided reference genes

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