Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 0.0e+00 1182.5 573 100.0
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 1.7e-172 610.1 503 59.6
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 1.9e-171 606.7 580 54.1
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 7.9e-170 601.3 576 54.0
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 1.3e-169 600.5 578 54.3
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.1e-168 597.4 513 57.1
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 2.5e-168 596.3 544 55.7
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 3.3e-168 595.9 514 58.4
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 7.4e-168 594.7 582 53.1
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 8.1e-167 591.3 573 52.4
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 5.3e-166 588.6 571 52.4
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 4.5e-165 585.5 580 54.1
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 7.6e-165 584.7 581 53.9
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.7e-164 583.6 565 53.1
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 2.9e-164 582.8 561 55.1
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 3.8e-164 582.4 567 54.3
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 3.8e-164 582.4 572 53.3
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 5.5e-163 578.6 571 53.8
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.5e-160 570.5 579 52.8
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 3.3e-160 569.3 566 50.4
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 4.3e-160 568.9 582 51.9
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 9.6e-160 567.8 581 52.7
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 4.8e-159 565.5 577 52.2
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 6.2e-159 565.1 578 51.7
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.1e-158 564.3 580 51.6
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 5.3e-158 562.0 573 51.3
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 9.0e-158 561.2 571 51.1
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 9.0e-158 561.2 571 51.1
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 1.2e-157 560.8 570 51.1
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.5e-157 560.5 566 51.8
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.5e-157 558.9 577 51.3
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 4.5e-157 558.9 569 50.4
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 5.8e-157 558.5 566 51.2
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 5.8e-157 558.5 577 51.1
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.6e-157 558.1 577 51.1
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.0e-156 557.8 578 51.4
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 1.3e-156 557.4 570 50.9
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 6.5e-156 555.1 574 52.3
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 8.4e-156 554.7 580 50.5
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.1e-155 554.3 575 49.6
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-155 554.3 586 50.7
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 1.1e-155 554.3 572 53.1
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 2.5e-155 553.1 568 51.1
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.5e-155 553.1 573 51.3
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 2.5e-155 553.1 568 50.5
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 4.2e-155 552.4 568 50.9
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 4.2e-155 552.4 522 53.4
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 4.6e-154 548.9 575 50.1
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 3.0e-153 546.2 574 50.7
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.9e-153 545.8 613 48.5
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 5.1e-153 545.4 486 57.6
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 6.7e-153 545.0 559 49.9
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 6.7e-153 545.0 576 49.7
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 1.9e-152 543.5 564 50.9
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 2.5e-152 543.1 574 49.5
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 3.3e-152 542.7 503 53.1
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 4.3e-152 542.3 585 50.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 7.4e-152 541.6 583 47.9
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 9.7e-152 541.2 564 50.4
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 9.7e-152 541.2 573 49.4
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.3e-151 540.8 573 49.2
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.6e-151 540.4 577 49.6
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 1.6e-151 540.4 567 49.9
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.8e-151 539.7 539 51.2
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.1e-150 537.7 527 53.3
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 2.4e-150 536.6 461 56.2
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 2.0e-149 533.5 567 49.0
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 4.5e-149 532.3 577 50.1
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 5.9e-149 531.9 561 49.4
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 5.9e-149 531.9 498 52.0
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 7.6e-149 531.6 575 48.5
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.0e-148 531.2 591 47.2
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 6.5e-148 528.5 600 47.8
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 1.9e-147 526.9 571 50.1
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 5.5e-147 525.4 573 49.0
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 7.2e-147 525.0 498 53.0
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 2.1e-146 523.5 566 48.6
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 3.6e-146 522.7 578 48.1
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 6.3e-143 511.9 541 49.5
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 3.1e-142 509.6 400 62.2
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 5.3e-142 508.8 460 55.0
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.0e-140 504.6 546 49.5
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 6.5e-140 501.9 481 49.9
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 6.1e-138 495.4 487 49.3
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 9.7e-136 488.0 572 47.7
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 3.7e-135 486.1 419 56.3
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 4.8e-135 485.7 543 46.4
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 3.8e-132 476.1 497 50.9
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-131 474.6 592 46.1
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 2.7e-130 469.9 454 53.7
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 4.7e-130 469.2 527 48.0
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 6.7e-129 465.3 500 47.6
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.1e-128 464.5 583 43.6
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 1.7e-127 460.7 578 46.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 3.5e-125 453.0 422 53.6
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.0e-124 451.4 445 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 2.2e-124 450.3 553 45.0
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 2.7e-117 426.8 568 43.8
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 2.2e-116 423.7 439 52.4
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 4.5e-109 399.4 338 59.5
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 5.5e-107 392.5 458 44.5
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 2.2e-103 380.6 341 58.7
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 4.1e-102 376.3 381 49.1
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 3.4e-96 356.7 323 56.3
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.6e-93 347.8 586 37.5
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 3.3e-91 340.1 280 60.7
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 4.0e-73 280.0 282 52.8
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 3.4e-72 276.9 299 46.8
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.6e-69 268.1 229 57.6
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 7.6e-64 249.2 387 37.0
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 1.2e-61 241.9 172 62.8
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.2e-61 241.9 173 63.0
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 2.0e-56 224.6 155 63.9
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-52 209.9 153 66.7
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-52 209.9 153 66.7
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-52 209.9 153 66.7
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.1e-52 209.9 153 66.7
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 3.2e-46 190.7 231 41.6
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 7.4e-43 179.5 227 40.5
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 8.2e-42 176.0 212 45.3
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 4.0e-41 173.7 234 41.9
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 1.1e-38 165.6 194 46.4
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 3.5e-37 160.6 444 28.4
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 3.9e-36 157.1 147 52.4
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 8.7e-36 156.0 98 72.4
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.5e-35 155.2 126 51.6
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 1.0e-31 142.5 365 29.6
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 8.8e-28 129.4 218 38.1
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 2.0e-24 118.2 94 60.6
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 7.7e-24 116.3 171 39.8
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-21 108.6 151 43.7
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 3.9e-20 104.0 236 28.8
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 5.1e-20 103.6 69 63.8
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.0e-16 91.7 117 44.4
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-14 84.3 159 33.3
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-13 80.1 53 67.9
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 1.8e-12 78.6 107 41.1
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 5.2e-12 77.0 45 68.9
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 2.6e-11 74.7 69 44.9
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 5.9e-08 63.5 38 73.7
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 3.8e-07 60.8 111 31.5
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.1e-06 59.3 92 34.8


User provided reference genes

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