Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 2.5e-121 438.7 213 100.0
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 5.5e-60 235.0 208 58.7
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 1.6e-59 233.4 226 54.4
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.0e-58 230.7 213 56.3
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 8.8e-58 227.6 207 57.0
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 8.8e-58 227.6 207 57.5
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.5e-57 226.9 226 53.5
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 3.3e-57 225.7 216 53.7
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 5.7e-57 224.9 206 55.8
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.3e-56 223.8 201 56.2
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.3e-56 223.8 217 54.4
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.7e-56 223.4 217 53.9
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 4.8e-56 221.9 199 55.8
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 4.8e-56 221.9 216 54.2
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 6.3e-56 221.5 210 55.7
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 2.4e-55 219.5 199 57.3
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 5.3e-55 218.4 212 56.1
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 5.3e-55 218.4 216 53.7
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 7.0e-55 218.0 210 53.8
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 9.1e-55 217.6 202 55.9
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.2e-54 217.2 208 53.8
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.2e-54 217.2 214 52.8
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.2e-54 217.2 210 55.2
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.0e-54 216.5 207 54.6
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 2.0e-54 216.5 204 54.4
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.0e-54 216.5 215 54.0
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 2.0e-54 216.5 212 51.9
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 2.0e-54 216.5 201 54.7
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 2.0e-54 216.5 208 54.8
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 2.6e-54 216.1 205 54.6
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 2.6e-54 216.1 215 53.0
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 3.5e-54 215.7 197 55.3
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 3.5e-54 215.7 209 52.6
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 3.5e-54 215.7 205 56.6
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 4.5e-54 215.3 229 50.2
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 7.7e-54 214.5 210 53.8
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 1.7e-53 213.4 205 55.1
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.7e-53 213.4 199 54.8
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 1.7e-53 213.4 204 54.9
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 6.5e-53 211.5 204 55.4
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 6.5e-53 211.5 204 55.9
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 8.5e-53 211.1 213 53.5
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.1e-52 210.7 203 53.2
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.1e-52 210.7 213 53.5
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.1e-52 210.7 210 55.7
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.1e-52 210.7 200 56.5
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 1.1e-52 210.7 199 54.3
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.1e-52 210.7 197 54.8
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 1.9e-52 209.9 226 51.8
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 2.5e-52 209.5 199 56.3
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 3.2e-52 209.1 207 54.1
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 4.2e-52 208.8 218 50.9
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 5.5e-52 208.4 217 52.1
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 7.2e-52 208.0 208 53.4
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 7.2e-52 208.0 199 56.3
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 9.4e-52 207.6 220 52.3
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 9.4e-52 207.6 219 52.5
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-51 207.2 202 54.5
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 1.2e-51 207.2 202 54.5
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 1.2e-51 207.2 206 51.9
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.2e-51 207.2 198 53.5
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.6e-51 206.8 217 51.6
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.6e-51 206.8 213 53.5
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.1e-51 206.5 210 51.4
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 2.1e-51 206.5 208 51.0
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.1e-51 206.5 204 53.4
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 2.7e-51 206.1 205 52.2
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.7e-51 206.1 208 51.4
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.7e-51 206.1 206 52.4
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.6e-51 205.7 200 53.0
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 3.6e-51 205.7 223 49.3
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 4.7e-51 205.3 216 50.9
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 4.7e-51 205.3 208 53.4
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 4.7e-51 205.3 208 53.4
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 4.7e-51 205.3 198 54.0
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 4.7e-51 205.3 210 53.8
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 8.0e-51 204.5 198 54.5
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 8.0e-51 204.5 200 54.0
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 8.0e-51 204.5 209 53.6
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 1.0e-50 204.1 202 53.0
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.4e-50 203.8 206 52.4
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.8e-50 203.4 212 50.9
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.8e-50 203.4 202 53.5
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 2.3e-50 203.0 205 51.7
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 2.3e-50 203.0 206 52.9
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 4.0e-50 202.2 208 52.4
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 6.7e-50 201.4 191 56.0
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 6.7e-50 201.4 209 51.7
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 8.8e-50 201.1 207 49.8
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 8.8e-50 201.1 208 51.4
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.1e-49 200.7 199 51.3
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.5e-49 200.3 205 50.7
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.0e-49 199.9 208 54.3
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.0e-49 199.9 208 54.3
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 2.6e-49 199.5 206 51.9
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 4.4e-49 198.7 198 51.0
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 4.4e-49 198.7 208 50.0
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 4.4e-49 198.7 207 51.7
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 4.4e-49 198.7 200 51.5
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 7.5e-49 198.0 267 44.9
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 7.5e-49 198.0 267 44.9
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 7.5e-49 198.0 206 51.5
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 9.7e-49 197.6 196 54.1
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.7e-48 195.7 198 53.5
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 4.8e-48 195.3 200 54.0
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 8.2e-48 194.5 198 53.5
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 8.2e-48 194.5 211 54.5
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-47 194.1 198 53.0
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.0e-46 189.9 191 50.3
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-45 187.6 199 51.3
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 2.9e-45 186.0 205 49.8
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 2.9e-45 186.0 189 51.9
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 2.7e-43 179.5 202 47.5
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 1.5e-41 173.7 210 44.3
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 7.5e-41 171.4 213 44.1
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.8e-39 166.8 180 48.9
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 2.0e-38 163.3 156 56.4
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 2.2e-37 159.8 199 50.3
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 1.5e-36 157.1 184 49.5
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 9.4e-36 154.5 220 45.5
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.8e-34 147.9 167 49.7
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 4.4e-33 145.6 171 47.4
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.6e-30 137.1 210 42.4
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 2.8e-27 126.3 158 46.8
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 6.6e-21 105.1 143 45.5
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 2.3e-18 96.7 118 47.5
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.6e-17 93.2 105 49.5
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 2.3e-13 80.1 69 53.6
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 3.0e-13 79.7 195 30.3
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 1.5e-12 77.4 116 38.8
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 3.3e-12 76.3 78 47.4
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 8.9e-10 68.2 50 56.0
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.8e-09 65.5 92 40.2
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.9e-07 60.5 74 41.9


User provided reference genes

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