Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 7.2e-112 407.5 246 100.0
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.0e-78 297.4 226 81.0
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 4.0e-78 295.4 226 77.4
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 3.4e-77 292.4 226 81.0
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.2e-76 289.7 226 78.3
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 2.7e-74 282.7 226 76.1
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 6.5e-73 278.1 226 69.0
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 6.5e-73 278.1 226 77.9
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.1e-72 277.3 226 78.3
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 7.2e-72 274.6 227 77.1
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 7.2e-72 274.6 226 76.1
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 9.4e-72 274.2 226 76.1
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.6e-71 273.5 226 76.5
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.0e-70 270.8 226 76.1
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 6.8e-70 268.1 226 74.8
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 4.4e-69 265.4 226 77.4
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.7e-69 265.0 226 76.5
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 5.7e-69 265.0 226 76.5
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 9.8e-69 264.2 226 73.9
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 1.7e-68 263.5 227 74.4
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 1.7e-68 263.5 227 74.4
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.2e-68 263.1 226 76.1
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 3.7e-68 262.3 226 74.8
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.4e-67 259.6 226 75.2
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 5.4e-67 258.5 226 73.0
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.4e-67 258.5 226 74.3
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 7.0e-67 258.1 226 71.2
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 9.2e-67 257.7 226 69.5
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.7e-65 253.4 226 73.5
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 2.5e-64 249.6 226 68.6
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 2.5e-64 249.6 226 71.7
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 3.3e-64 249.2 226 74.3
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 4.3e-64 248.8 226 66.4
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 9.5e-64 247.7 225 72.9
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.6e-63 246.9 226 72.6
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 6.1e-63 245.0 226 73.0
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.8e-62 243.4 222 69.8
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.8e-62 243.4 226 71.7
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 5.2e-62 241.9 225 70.2
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 5.2e-62 241.9 222 68.5
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 6.8e-62 241.5 226 67.7
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.2e-61 240.7 222 73.0
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.5e-61 240.4 226 67.3
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 1.5e-61 240.4 226 67.3
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 9.8e-61 237.7 226 70.4
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 2.2e-60 236.5 226 67.7
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 2.9e-60 236.1 245 66.5
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 4.9e-60 235.3 226 71.7
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 6.4e-60 235.0 226 69.0
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 6.4e-60 235.0 225 69.8
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 8.3e-60 234.6 226 69.0
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 8.3e-60 234.6 226 67.3
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.8e-59 233.4 226 69.9
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.4e-59 233.0 226 69.5
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.2e-59 232.6 226 69.0
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 5.4e-59 231.9 227 70.5
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 5.4e-59 231.9 226 68.1
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 9.2e-59 231.1 222 69.8
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 1.2e-58 230.7 227 65.2
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 2.0e-58 229.9 226 67.7
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 2.0e-58 229.9 231 64.5
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 2.7e-58 229.6 226 67.7
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 3.5e-58 229.2 231 66.7
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 4.6e-58 228.8 226 69.0
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 4.6e-58 228.8 226 69.5
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.7e-57 226.9 226 66.8
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.7e-57 226.9 226 68.6
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.3e-57 226.5 245 63.7
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 6.6e-57 224.9 226 68.1
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.1e-56 224.2 226 68.1
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.1e-56 224.2 229 56.3
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.1e-56 224.2 222 65.3
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.3e-56 222.6 228 59.6
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 4.3e-56 222.2 226 68.1
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 5.6e-56 221.9 256 63.3
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 9.5e-56 221.1 226 67.7
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 4.7e-55 218.8 226 67.7
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.8e-54 216.9 226 67.7
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 3.1e-54 216.1 226 60.2
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 6.8e-54 214.9 226 66.4
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 8.9e-54 214.5 227 66.1
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 4.4e-53 212.2 226 65.5
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 5.8e-53 211.8 230 66.1
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 7.5e-53 211.5 227 67.4
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 9.8e-53 211.1 223 53.8
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 1.3e-52 210.7 226 66.4
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.1e-51 207.6 229 65.5
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 5.4e-51 205.3 233 65.7
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 7.0e-51 204.9 228 60.5
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.0e-50 203.4 230 57.0
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 3.5e-50 202.6 226 61.1
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.5e-50 202.6 230 57.0
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 4.6e-50 202.2 226 63.7
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 7.8e-50 201.4 226 63.3
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 1.0e-49 201.1 330 49.7
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 3.0e-49 199.5 226 64.6
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 6.6e-49 198.4 225 64.9
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.9e-48 196.8 151 73.5
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 4.3e-48 195.7 226 60.2
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 5.6e-48 195.3 230 51.7
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 3.6e-47 192.6 225 63.6
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 6.8e-46 188.3 235 60.9
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.4e-45 186.0 235 60.0
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 7.5e-45 184.9 228 61.4
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 9.8e-45 184.5 226 60.2
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 9.2e-43 177.9 226 61.5
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 4.6e-42 175.6 226 60.6
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 3.9e-41 172.6 233 57.9
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 1.5e-40 170.6 226 58.4
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 1.5e-40 170.6 228 57.5
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 2.5e-40 169.9 211 63.0
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 7.3e-40 168.3 226 57.5
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 7.3e-40 168.3 228 57.0
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 6.2e-39 165.2 226 56.6
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 3.1e-38 162.9 225 59.1
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 3.4e-37 159.5 96 84.4
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 7.8e-34 148.3 188 57.4
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.0e-29 133.7 226 50.0
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.1e-26 123.6 232 42.2
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 8.7e-25 118.2 62 95.2
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.9e-24 117.1 227 41.0
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 3.6e-23 112.8 221 39.8
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 2.4e-22 110.2 95 58.9
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 2.4e-22 110.2 228 37.7
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 1.1e-19 101.3 105 59.0
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 4.2e-19 99.4 68 75.0
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.6e-18 97.4 225 45.8
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 3.6e-15 86.3 162 40.1
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 2.5e-08 63.5 167 40.1
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 8.1e-07 58.5 41 73.2


User provided reference genes

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