Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 3.8e-210 734.6 364 100.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.3e-105 386.0 302 66.2
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 6.2e-104 381.7 314 62.1
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 3.1e-103 379.4 234 73.1
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 6.4e-101 371.7 299 62.2
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.1e-100 370.9 281 63.0
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.9e-100 370.2 308 60.7
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 4.2e-100 369.0 267 64.4
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 5.4e-100 368.6 326 56.7
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 7.1e-100 368.2 306 63.1
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 9.3e-100 367.9 306 62.1
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 9.3e-100 367.9 314 63.1
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.2e-99 367.5 262 67.9
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.0e-98 364.4 322 58.7
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 1.3e-98 364.0 310 60.0
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 1.8e-98 363.6 305 58.4
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 5.1e-98 362.1 301 61.5
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 6.7e-98 361.7 301 60.8
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.1e-97 360.9 235 70.2
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.1e-97 360.9 235 70.2
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 1.1e-97 360.9 245 68.6
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.9e-97 360.1 301 60.8
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 2.1e-96 356.7 231 70.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 3.7e-96 355.9 231 70.1
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.7e-96 355.9 268 63.4
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.8e-96 355.5 291 61.5
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.2e-96 355.1 245 66.9
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.2e-96 355.1 260 64.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 8.1e-96 354.8 236 68.2
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.1e-95 354.4 233 69.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.1e-95 354.4 240 68.3
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.4e-95 354.0 241 68.0
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.4e-95 354.0 245 67.3
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.4e-95 354.0 235 70.2
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.4e-95 354.0 235 70.2
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 1.8e-95 353.6 308 59.7
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 3.1e-95 352.8 287 58.9
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.0e-95 352.4 308 58.8
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.0e-95 352.4 300 60.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.0e-95 352.4 300 60.0
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 5.3e-95 352.1 304 59.2
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.3e-95 352.1 300 60.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 9.0e-95 351.3 301 59.8
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.2e-94 350.9 275 63.6
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.2e-94 350.9 307 58.3
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 2.0e-94 350.1 316 57.6
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.0e-94 350.1 246 66.3
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 2.0e-94 350.1 301 59.5
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.6e-94 349.7 304 61.5
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.6e-94 349.7 340 54.7
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 5.8e-94 348.6 267 63.7
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.8e-94 348.6 304 58.2
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.0e-93 347.8 299 59.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.3e-93 347.4 288 60.4
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.7e-93 347.1 353 51.0
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 3.8e-93 345.9 239 66.9
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 8.4e-93 344.7 309 58.6
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.1e-92 344.4 310 57.4
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 1.4e-92 344.0 285 61.8
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.5e-92 343.2 232 66.8
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.2e-92 342.4 318 56.6
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 4.2e-92 342.4 229 69.4
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 4.2e-92 342.4 264 62.5
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.5e-92 342.0 318 56.3
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 7.1e-92 341.7 233 67.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 7.1e-92 341.7 307 57.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 9.3e-92 341.3 300 57.3
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.2e-91 340.9 319 56.4
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.6e-91 340.5 264 62.9
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.1e-91 340.1 308 57.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.1e-91 340.1 309 57.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 2.7e-91 339.7 308 57.5
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 4.6e-91 339.0 310 57.4
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 6.0e-91 338.6 303 57.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 7.9e-91 338.2 245 63.7
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 2.3e-90 336.7 310 57.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.3e-90 336.7 245 64.5
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.3e-90 336.7 315 53.7
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.9e-90 335.9 303 57.8
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 8.7e-90 334.7 301 58.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.1e-89 334.3 304 57.6
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.1e-89 334.3 312 54.8
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.9e-89 333.6 301 58.8
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 2.5e-89 333.2 213 71.8
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.5e-89 333.2 264 60.6
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 5.7e-89 332.0 284 57.4
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 7.4e-89 331.6 312 54.8
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.3e-88 330.9 309 56.0
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.1e-88 330.1 356 50.8
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.4e-87 327.4 363 49.9
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.4e-87 326.6 288 59.7
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 6.9e-87 325.1 266 60.2
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 6.9e-87 325.1 266 60.2
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 9.0e-87 324.7 201 73.1
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.5e-86 323.9 276 57.6
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 2.0e-86 323.6 343 52.2
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 2.0e-86 323.6 304 54.9
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 7.6e-86 321.6 235 65.5
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.3e-85 320.9 277 59.6
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 2.9e-85 319.7 277 59.6
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.9e-85 318.9 212 70.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.9e-84 317.0 312 55.4
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 3.2e-84 316.2 231 64.5
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 7.1e-84 315.1 228 64.5
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 3.5e-83 312.8 263 58.6
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 2.3e-82 310.1 320 54.1
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 8.7e-82 308.1 327 52.0
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.5e-81 307.4 263 55.5
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.5e-81 307.4 302 55.0
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.7e-80 302.8 305 54.4
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.9e-79 298.5 309 54.0
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 8.5e-77 291.6 249 57.0
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.2e-75 287.7 314 51.9
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.1e-75 287.0 237 59.1
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 3.9e-74 282.7 235 57.0
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 5.7e-73 278.9 344 45.3
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.7e-72 277.3 233 56.7
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.7e-69 267.3 251 55.4
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 8.5e-69 265.0 202 65.3
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.0e-66 258.1 310 49.7
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-64 251.1 222 56.3
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 3.7e-64 249.6 233 51.5
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 3.7e-64 249.6 233 51.5
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 5.3e-63 245.7 234 49.6
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 3.8e-61 239.6 196 60.2
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 5.5e-60 235.7 177 66.7
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-56 224.6 196 56.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.7e-56 223.0 194 57.7
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.6e-54 216.9 245 43.7
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.1e-52 211.5 213 52.1
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.9e-52 210.7 139 68.3
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.2e-52 208.8 161 64.0
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.4e-50 204.5 192 54.2
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.8e-48 196.8 123 71.5
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.4e-47 193.7 145 64.1
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 9.4e-44 181.8 114 71.1
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 8.0e-43 178.7 240 38.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.3e-40 168.7 196 46.9
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 3.5e-38 163.3 180 48.3
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 7.7e-38 162.2 283 36.7
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.2e-36 156.4 107 65.4
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.2e-34 149.4 168 51.2
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.9e-29 133.3 147 49.0
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 5.2e-26 122.9 173 42.2
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.1e-23 113.2 170 40.0
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 6.0e-22 109.4 140 48.6
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.0e-21 107.1 76 60.5
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 9.5e-20 102.1 169 43.8
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 4.7e-19 99.8 106 45.3
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.0e-18 96.7 72 59.7
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 8.3e-16 89.0 81 59.3
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 4.1e-15 86.7 57 68.4
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.8e-14 82.4 54 64.8
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.1e-10 70.5 54 63.0
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 8.9e-10 68.9 36 77.8
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 4.1e-07 60.1 181 28.7


User provided reference genes

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