Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1426.4 698 100.0
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1159.4 698 78.8
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 698 77.5
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 698 77.8
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 698 78.2
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 698 77.2
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1132.9 698 77.9
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 698 76.8
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 696 77.2
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 698 76.4
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 697 77.2
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 694 77.1
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1128.2 698 77.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 691 77.0
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1121.7 694 77.2
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 693 76.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 695 76.7
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1120.1 694 77.2
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 694 77.2
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 696 75.6
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 692 76.4
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 694 76.9
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1114.4 699 77.4
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 698 76.8
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 694 76.7
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1113.2 694 75.6
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1112.4 697 76.3
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1109.0 698 75.5
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 698 75.1
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1107.0 694 75.2
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1100.9 698 75.1
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 0.0e+00 1100.1 678 77.6
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1099.7 698 74.8
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1099.3 698 74.8
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1099.3 697 75.5
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1099.0 694 75.5
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1099.0 723 73.7
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 694 75.1
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1096.3 694 74.1
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1096.3 699 74.5
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1094.7 692 74.9
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1094.7 695 75.0
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1094.0 699 74.7
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1094.0 694 75.2
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1093.6 700 75.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1093.2 694 75.8
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1093.2 694 75.5
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1092.0 694 75.8
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1091.6 698 75.6
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1091.6 693 75.5
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1090.9 699 74.5
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1089.7 698 74.4
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1088.2 694 74.6
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1087.8 698 74.2
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1087.8 698 75.1
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 694 74.4
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1083.6 693 75.3
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1083.2 677 76.5
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 698 73.8
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1082.4 698 74.8
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1082.4 697 73.9
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1080.1 698 73.9
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1079.7 698 75.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1078.5 698 73.5
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1075.1 694 74.2
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 2.4e-311 1071.6 694 72.9
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 2.4e-311 1071.6 694 74.1
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 3.3e-311 1071.2 696 73.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 3.3e-311 1071.2 695 73.7
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 7.2e-311 1070.1 697 72.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.6e-310 1067.8 694 72.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 3.6e-310 1067.8 698 73.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 4.7e-310 1067.4 696 72.4
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 8.0e-310 1066.6 699 73.0
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 6.8e-309 1063.5 694 72.6
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 5.8e-308 1060.4 697 71.7
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 1.7e-307 1058.9 718 72.3
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 1.1e-306 1056.2 747 69.6
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 1.9e-306 1055.4 696 71.1
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 1.2e-305 1052.7 694 73.8
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 2.1e-305 1052.0 696 71.3
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 2.7e-305 1051.6 692 73.1
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 6.0e-305 1050.4 718 71.0
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 1.0e-304 1049.7 698 71.3
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 8.6e-304 1046.6 698 71.3
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 4.3e-303 1044.3 687 71.3
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 1.8e-301 1038.9 740 70.3
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 6.8e-301 1036.9 698 72.6
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.4e-300 1034.2 693 72.7
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 6.4e-299 1030.4 707 71.7
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.9e-298 1028.9 647 74.8
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 7.1e-298 1026.9 694 71.6
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 3.5e-297 1024.6 705 71.9
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 3.0e-296 1021.5 696 72.1
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 6.6e-296 1020.4 713 68.4
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 5.4e-290 1000.7 681 71.7
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.5e-289 998.0 681 71.4
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 8.1e-286 986.9 699 69.2
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 3.1e-285 984.9 611 76.3
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 8.1e-278 960.3 698 67.2
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 8.4e-275 950.3 689 66.3
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.9e-266 922.5 585 74.4
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 2.5e-255 885.6 700 62.3
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 8.5e-251 870.5 641 66.5
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 6.9e-245 850.9 540 76.1
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 5.1e-240 834.7 712 60.8
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 4.8e-238 828.2 697 58.4
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.2e-236 823.5 703 59.6
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 7.7e-236 820.8 581 67.5
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.0e-235 818.1 703 58.9
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.0e-235 818.1 703 58.9
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.6e-228 796.6 702 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 3.0e-224 782.3 712 58.0
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.8e-221 773.1 539 70.7
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.9e-204 714.9 474 73.0
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.4e-168 597.4 386 74.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.9e-162 577.0 724 45.7
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 4.5e-143 512.7 376 67.3
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.9e-123 446.4 506 49.0
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.0e-115 421.8 768 36.2
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.8e-104 384.4 334 60.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 5.5e-101 372.9 810 32.3
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.8e-99 367.9 268 66.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 2.0e-95 354.4 248 71.0
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 7.1e-72 276.2 178 72.5
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 4.6e-71 273.5 247 56.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.2e-68 265.4 234 60.3
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.2e-68 265.4 166 72.3
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.1e-68 264.6 625 33.1
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.2e-64 250.8 183 66.7
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 4.6e-55 220.3 127 79.5
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 3.0e-54 217.6 235 51.5
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 2.1e-44 184.9 138 67.4
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-42 179.1 145 65.5
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.7e-36 157.5 232 41.8
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 4.9e-33 147.1 97 71.1
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 1.2e-31 142.5 75 86.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.5e-31 141.0 76 84.2
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 8.2e-20 103.2 90 55.6
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 3.1e-19 101.3 76 57.9
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 8.2e-12 76.6 51 72.5
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 3.1e-11 74.7 87 44.8
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 6.9e-11 73.6 51 66.7


User provided reference genes

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