Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 6.4e-191 670.6 347 100.0
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 9.7e-123 444.1 299 76.3
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 9.7e-123 444.1 319 69.9
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.3e-122 443.7 294 76.2
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.6e-120 436.8 310 70.6
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 3.5e-120 435.6 332 67.8
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.3e-119 433.7 293 74.4
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 8.5e-119 431.0 287 76.0
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.5e-118 430.3 304 73.4
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.5e-118 430.3 277 77.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.5e-118 429.5 295 73.2
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 5.5e-118 428.3 287 74.9
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.1e-117 426.4 302 72.8
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 8.0e-117 424.5 282 74.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 4.0e-116 422.2 341 66.9
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 5.2e-116 421.8 278 75.2
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 6.8e-116 421.4 311 68.5
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 6.8e-116 421.4 296 72.0
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 6.8e-116 421.4 306 70.3
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 6.8e-116 421.4 281 74.7
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.5e-115 420.2 278 74.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 2.0e-115 419.9 276 76.4
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 3.4e-115 419.1 275 76.4
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 4.4e-115 418.7 279 75.3
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 4.4e-115 418.7 278 74.5
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.3e-114 417.2 310 68.7
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.7e-114 416.8 287 72.8
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.1e-113 414.1 336 64.9
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 5.3e-113 411.8 278 74.5
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 2.7e-112 409.5 293 72.0
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 7.7e-112 407.9 278 73.4
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 3.8e-111 405.6 277 71.8
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 5.0e-111 405.2 285 69.5
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 5.0e-111 405.2 319 66.1
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 6.5e-111 404.8 296 71.3
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 8.5e-111 404.4 343 62.1
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.5e-110 403.7 279 73.8
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 4.2e-110 402.1 275 73.8
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.2e-110 401.4 340 64.1
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 9.4e-110 401.0 278 70.5
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.6e-109 400.2 309 65.7
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.7e-109 399.4 280 71.4
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 2.3e-108 396.4 278 69.1
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 4.0e-108 395.6 280 70.4
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 6.8e-108 394.8 281 68.7
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 1.5e-107 393.7 279 70.6
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 2.6e-107 392.9 278 69.8
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 4.4e-107 392.1 289 69.9
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 5.7e-107 391.7 278 69.8
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 5.7e-107 391.7 282 70.2
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.3e-106 390.6 278 70.1
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 2.2e-106 389.8 281 68.3
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 2.2e-106 389.8 306 65.7
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 3.7e-106 389.0 317 65.6
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.4e-105 387.1 281 69.0
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 2.4e-105 386.3 277 70.0
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 2.7e-104 382.9 278 68.7
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.5e-104 382.5 312 66.0
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 3.5e-104 382.5 316 63.6
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 3.5e-104 382.5 279 67.7
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.5e-104 382.5 255 72.9
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.3e-103 380.6 327 63.0
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.7e-103 380.2 277 69.0
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 5.5e-102 375.2 280 68.9
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 9.5e-102 374.4 279 67.4
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.2e-101 374.0 281 68.7
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-101 374.0 281 67.6
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 2.8e-101 372.9 280 67.1
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 3.6e-101 372.5 280 67.5
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 4.0e-100 369.0 275 69.1
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.9e-100 367.9 281 68.7
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 8.3e-98 361.3 297 64.3
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 3.9e-95 352.4 317 60.9
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.9e-94 350.1 251 68.9
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.2e-93 347.4 324 59.9
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.7e-93 345.5 276 64.5
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 6.1e-93 345.1 288 62.8
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 8.0e-93 344.7 252 69.0
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.5e-91 340.5 302 62.6
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.0e-87 327.8 276 62.7
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.5e-86 323.9 230 71.3
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 7.3e-86 321.6 299 59.2
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.1e-85 320.1 307 59.0
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.9e-84 314.7 296 58.8
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 2.0e-83 313.5 279 58.4
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.2e-82 310.1 287 58.5
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.9e-82 309.7 287 58.9
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 8.3e-82 308.1 211 75.8
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 8.3e-82 308.1 293 59.4
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.1e-81 307.8 301 54.8
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.1e-81 305.8 285 58.2
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 5.4e-81 305.4 280 57.9
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 4.7e-77 292.4 197 74.1
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 5.8e-75 285.4 278 58.3
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.7e-74 283.9 285 51.9
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.1e-73 281.2 198 70.2
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.4e-73 278.9 255 56.1
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.2e-73 278.1 255 56.1
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.8e-68 263.8 255 54.1
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.6e-64 250.8 165 75.2
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 5.1e-63 245.7 260 53.8
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 3.1e-60 236.5 219 57.1
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 4.4e-59 232.6 207 61.4
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 7.3e-54 215.3 319 43.6
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.4e-51 206.5 158 65.8
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 5.8e-43 179.1 114 78.9
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.2e-42 177.2 132 65.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 5.5e-41 172.6 143 64.3
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 4.5e-35 152.9 242 37.2
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-34 151.4 186 49.5
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 3.0e-31 140.2 188 45.7
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.1e-30 138.3 185 46.5
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 7.4e-30 135.6 308 33.1
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.8e-28 131.0 214 41.6
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 2.4e-28 130.6 225 41.3
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 3.1e-28 130.2 212 41.0
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.6e-24 117.9 101 59.4
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 2.1e-24 117.5 137 51.1
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.7e-24 117.1 71 74.6
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.4e-23 114.8 79 73.4
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 6.7e-23 112.5 232 32.3
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.5e-22 111.3 80 70.0
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 9.7e-22 108.6 86 66.3
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 2.2e-21 107.5 90 57.8
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 4.8e-21 106.3 69 73.9
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 2.9e-18 97.1 72 63.9
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.8e-18 96.7 58 77.6
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 9.7e-14 82.0 151 35.1
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 4.8e-13 79.7 65 63.1
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 2.4e-12 77.4 127 39.4
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-11 73.6 78 50.0
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 4.5e-11 73.2 61 60.7
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 8.5e-10 68.9 71 47.9
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 1.1e-09 68.6 57 63.2
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 2.5e-09 67.4 34 94.1
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 2.1e-08 64.3 39 74.4
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 6.1e-08 62.8 142 34.5
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.0e-07 62.0 49 65.3


User provided reference genes

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