Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 5.6e-115 417.5 198 100.0
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 9.0e-65 250.8 190 61.6
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 2.0e-64 249.6 187 63.6
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 2.9e-63 245.7 185 63.8
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 5.5e-62 241.5 187 59.9
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 1.2e-61 240.4 187 61.0
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 4.6e-61 238.4 187 60.4
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 4.6e-61 238.4 187 59.4
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 6.0e-61 238.0 187 59.4
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 1.0e-60 237.3 187 58.8
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 1.3e-60 236.9 187 59.4
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.8e-60 236.5 188 57.4
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.8e-60 236.5 186 59.7
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.8e-60 236.5 187 58.8
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 1.8e-60 236.5 188 60.1
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 2.3e-60 236.1 189 58.7
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 2.3e-60 236.1 188 57.4
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.0e-60 235.7 187 58.8
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 3.9e-60 235.3 189 58.7
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.9e-60 235.3 187 58.8
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 8.7e-60 234.2 192 58.3
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.1e-59 233.8 185 58.9
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 2.5e-59 232.6 188 56.9
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 4.3e-59 231.9 188 59.6
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 5.7e-59 231.5 187 60.4
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 5.7e-59 231.5 189 58.2
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 5.7e-59 231.5 185 58.4
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 7.4e-59 231.1 187 56.1
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 9.6e-59 230.7 187 57.2
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 9.6e-59 230.7 187 57.8
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 9.6e-59 230.7 184 58.2
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.3e-58 230.3 185 58.4
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 1.3e-58 230.3 187 58.8
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.6e-58 229.9 186 58.1
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 2.1e-58 229.6 187 57.2
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 2.8e-58 229.2 187 57.2
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 2.8e-58 229.2 186 58.1
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 2.8e-58 229.2 187 57.2
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 2.8e-58 229.2 186 57.0
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 2.8e-58 229.2 186 57.5
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 3.7e-58 228.8 187 58.8
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 6.3e-58 228.0 187 58.8
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 6.3e-58 228.0 187 56.7
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 8.2e-58 227.6 187 56.1
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 8.2e-58 227.6 187 56.1
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 8.2e-58 227.6 186 58.1
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 1.1e-57 227.3 186 58.6
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.1e-57 227.3 187 57.8
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 1.4e-57 226.9 187 56.1
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 1.4e-57 226.9 187 55.1
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 1.4e-57 226.9 188 56.9
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 2.4e-57 226.1 185 55.7
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 2.4e-57 226.1 186 57.0
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 2.4e-57 226.1 187 58.3
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 2.4e-57 226.1 187 58.3
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 2.4e-57 226.1 183 57.4
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 3.1e-57 225.7 188 56.9
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 3.1e-57 225.7 187 54.0
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 3.1e-57 225.7 187 58.3
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 4.1e-57 225.3 187 54.0
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 4.1e-57 225.3 187 56.1
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 4.1e-57 225.3 187 55.1
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 5.3e-57 224.9 187 54.0
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 9.0e-57 224.2 187 56.7
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 9.0e-57 224.2 187 56.1
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 9.0e-57 224.2 187 56.1
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.2e-56 223.8 187 54.0
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 1.2e-56 223.8 187 54.5
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 1.2e-56 223.8 186 55.4
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.4e-56 222.2 162 61.1
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 1.0e-55 220.7 190 55.8
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 1.7e-55 219.9 188 55.3
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 1.7e-55 219.9 186 54.3
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 2.2e-55 219.5 191 56.5
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 5.0e-55 218.4 179 55.3
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 3.2e-54 215.7 177 57.1
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 9.3e-54 214.2 187 54.0
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 1.6e-53 213.4 187 54.5
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 2.1e-53 213.0 189 54.0
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 6.1e-53 211.5 184 54.3
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 3.0e-52 209.1 188 53.2
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 9.7e-51 204.1 185 54.6
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.3e-50 203.8 160 56.9
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 2.8e-50 202.6 199 49.2
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 2.8e-50 202.6 199 49.2
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 3.7e-50 202.2 188 52.7
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 2.6e-48 196.1 201 48.8
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 1.3e-47 193.7 173 52.0
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 1.8e-44 183.3 210 45.7
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 1.8e-44 183.3 147 57.8
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 3.0e-44 182.6 153 55.6
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.5e-43 180.3 126 64.3
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 1.5e-43 180.3 188 47.9
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 3.3e-43 179.1 148 56.1
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 9.1e-41 171.0 144 53.5
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 2.0e-40 169.9 163 49.1
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 3.6e-37 159.1 124 58.1
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 4.7e-37 158.7 145 53.8
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 6.1e-37 158.3 143 49.7
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.8e-33 146.7 128 50.8
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 3.1e-33 146.0 128 51.6
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 9.1e-33 144.4 130 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 4.7e-29 132.1 135 51.1
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 4.7e-29 132.1 184 36.4
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 6.1e-29 131.7 144 45.1
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 1.4e-28 130.6 293 28.7
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 7.5e-27 124.8 152 44.1
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 8.2e-26 121.3 195 34.9
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 3.5e-24 115.9 165 36.4
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 8.0e-21 104.8 86 52.3
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 3.0e-20 102.8 86 51.2
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 5.4e-17 92.0 103 44.7
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.5e-14 84.0 128 37.5
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 3.6e-13 79.3 59 64.4
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 3.0e-12 76.3 61 60.7
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 1.8e-09 67.0 49 55.1
CBR_g30366 Chara braunii HOM05D007035 ORTHO05D008774 2.3e-07 60.1 113 31.9


User provided reference genes

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