Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.3e-135 486.5 258 100.0
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 8.1e-82 307.8 258 66.7
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 3.8e-79 298.9 258 65.5
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.7e-76 290.0 258 65.1
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.1e-76 288.5 259 63.7
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.7e-76 287.7 258 64.0
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-75 287.3 258 63.6
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.5e-75 287.0 255 66.7
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 2.5e-75 286.2 254 64.6
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.6e-74 283.5 263 63.9
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 2.8e-74 282.7 262 64.5
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.2e-74 281.6 258 62.4
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 3.1e-73 279.3 258 62.0
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.3e-73 278.5 258 62.4
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.9e-73 278.1 258 63.6
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 9.0e-73 277.7 254 62.6
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.6e-72 276.2 252 63.9
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 4.4e-72 275.4 258 62.8
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 4.4e-72 275.4 257 63.4
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.6e-72 274.6 258 61.2
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.3e-71 273.9 254 61.4
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 4.9e-71 271.9 262 63.7
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.4e-70 270.4 257 60.3
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.4e-70 270.4 255 61.6
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 2.4e-70 269.6 256 59.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.4e-70 269.6 254 62.2
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 5.4e-70 268.5 258 61.2
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 7.1e-70 268.1 258 62.0
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 7.1e-70 268.1 265 63.0
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 7.1e-70 268.1 254 61.4
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 7.1e-70 268.1 254 60.6
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.6e-69 266.9 257 61.1
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 2.7e-69 266.2 258 60.5
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 3.5e-69 265.8 254 62.6
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.6e-69 265.4 262 59.9
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 7.9e-69 264.6 254 61.8
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.0e-68 264.2 258 61.2
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.3e-68 263.8 252 61.1
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.5e-67 260.4 250 61.2
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 1.5e-67 260.4 253 60.5
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 9.6e-67 257.7 258 60.1
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.3e-66 257.3 255 60.4
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 2.1e-66 256.5 258 60.1
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.1e-66 256.5 252 61.5
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 2.8e-66 256.1 260 60.4
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 8.1e-66 254.6 261 59.8
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 8.1e-66 254.6 263 59.3
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.1e-65 254.2 258 59.7
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.1e-65 254.2 258 60.1
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.4e-65 253.8 256 60.2
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 1.8e-65 253.4 256 60.2
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-65 253.4 287 54.0
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 2.4e-65 253.1 256 60.2
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 4.0e-65 252.3 256 59.8
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 4.0e-65 252.3 256 58.6
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 6.9e-65 251.5 258 60.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.0e-65 251.1 254 57.9
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 1.2e-64 250.8 258 61.6
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.2e-64 250.8 251 59.0
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.2e-64 250.8 254 57.9
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.2e-64 250.8 250 59.6
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.5e-64 250.4 260 60.0
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.5e-64 250.4 255 58.8
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 2.0e-64 250.0 258 58.1
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.0e-64 250.0 258 57.4
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 3.4e-64 249.2 264 59.5
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.4e-64 249.2 254 57.9
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 3.4e-64 249.2 252 61.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 3.4e-64 249.2 255 59.6
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.3e-63 247.3 252 60.7
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.3e-63 247.3 249 59.4
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.7e-63 246.9 252 59.1
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.7e-63 246.9 249 59.4
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.7e-63 246.9 278 56.8
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.2e-63 246.5 252 59.5
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 2.9e-63 246.1 265 57.7
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 6.4e-63 245.0 255 58.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 8.4e-63 244.6 255 58.4
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.1e-62 244.2 261 57.1
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.9e-62 243.4 258 56.6
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.9e-62 243.4 262 59.2
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.9e-62 243.4 250 58.8
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 2.4e-62 243.0 256 57.8
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 2.4e-62 243.0 250 57.2
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 5.5e-62 241.9 251 57.0
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 9.3e-62 241.1 151 84.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.7e-61 239.6 153 82.4
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 6.0e-61 238.4 256 57.0
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 6.0e-61 238.4 257 58.0
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.9e-61 238.0 260 58.1
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 3.0e-60 236.1 256 57.8
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 3.9e-60 235.7 257 58.0
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 5.1e-60 235.3 257 57.6
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 6.7e-60 235.0 153 83.7
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.1e-59 234.2 267 55.8
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 3.3e-59 232.6 252 57.1
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 7.4e-59 231.5 258 55.8
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 9.6e-59 231.1 262 54.6
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.3e-58 230.7 256 55.5
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 1.6e-58 230.3 258 56.6
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 8.1e-58 228.0 298 50.0
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 1.8e-57 226.9 251 55.4
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 3.1e-57 226.1 229 59.8
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 3.1e-57 226.1 260 56.5
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 5.3e-57 225.3 373 44.8
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.5e-56 223.8 267 55.1
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.0e-56 223.4 261 54.8
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.9e-55 219.5 229 60.7
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 4.9e-55 218.8 252 54.8
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 7.9e-53 211.5 306 45.8
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.3e-52 210.7 151 76.2
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 7.4e-51 204.9 271 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.4e-49 199.9 279 46.6
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.7e-47 193.7 225 53.8
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 5.5e-46 188.7 250 47.6
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.6e-45 187.2 228 53.9
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 4.8e-42 175.6 258 47.7
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 5.9e-40 168.7 281 42.3
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 8.8e-36 154.8 272 43.8
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 8.8e-36 154.8 225 48.9
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.1e-35 154.5 178 54.5
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 3.3e-35 152.9 99 80.8
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.8e-34 149.8 101 78.2
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 8.2e-34 148.3 177 50.8
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 5.3e-33 145.6 258 43.8
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 2.6e-32 143.3 127 63.0
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 1.4e-30 137.5 208 46.6
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.4e-28 131.0 198 47.0
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 3.5e-24 116.3 156 49.4
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.9e-24 115.5 183 47.5
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 5.2e-20 102.4 123 48.8
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 8.8e-20 101.7 103 60.2
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 1.5e-19 100.9 231 39.4
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.1e-17 94.7 169 38.5
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 4.1e-17 92.8 61 77.0
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 9.1e-17 91.7 55 85.5
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 2.2e-15 87.0 156 41.7
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.7e-13 80.1 152 38.8
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 5.2e-12 75.9 52 76.9
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.0e-11 73.9 40 82.5
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 5.7e-11 72.4 63 58.7
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 7.0e-09 65.5 95 43.2
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 1.2e-08 64.7 133 37.6
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 4.5e-08 62.8 100 42.0
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 5.9e-08 62.4 187 34.8
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 5.9e-08 62.4 187 34.8
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 3.8e-07 59.7 115 36.5


User provided reference genes

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