Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G003 Amborella trichopoda HOM05D006711 ORTHO05D008104 2.1e-43 178.7 97 100.0
ATR0820G148 Amborella trichopoda HOM05D006711 ORTHO05D008104 4.3e-28 127.9 97 76.3
ATR1149G012 Amborella trichopoda HOM05D006711 ORTHO05D008104 2.5e-20 102.1 76 75.0
Hund09419 Selenicereus undatus HOM05D006711 ORTHO05D008104 3.2e-15 85.1 68 70.6
AUR62008246 Chenopodium quinoa HOM05D001451 ORTHO05D008104 5.5e-15 84.3 68 70.6
Medtr4g106700 Medicago truncatula HOM05D006711 ORTHO05D008104 5.5e-15 84.3 68 70.6
AUR62031000 Chenopodium quinoa HOM05D006711 ORTHO05D008104 7.1e-15 84.0 89 58.4
Sc04g0001970 Simmondsia chinensis HOM05D006711 ORTHO05D008104 7.1e-15 84.0 89 58.4
MBI15_g24174_MAGBIO Magnolia biondii HOM05D006711 ORTHO05D008104 1.2e-14 83.2 60 76.7
Phvul.003G198200 Phaseolus vulgaris HOM05D006711 ORTHO05D008104 2.1e-14 82.4 60 73.3
Glyma.05G035600 Glycine max HOM05D006711 ORTHO05D008104 2.7e-14 82.0 60 71.7
Ah.10g035450 Amaranthus hybridus HOM05D006711 ORTHO05D008104 3.5e-14 81.6 68 69.1
Cfa019085 Carpinus fangiana HOM05D006711 ORTHO05D008104 3.5e-14 81.6 59 74.6
Eucgr.K02867 Eucalyptus grandis HOM05D006711 ORTHO05D008104 1.0e-13 80.1 68 67.6
HPP92_010905 Vanilla planifolia HOM05D006711 ORTHO05D008104 1.0e-13 80.1 68 69.1
HPP92_010907 Vanilla planifolia HOM05D006711 ORTHO05D008104 1.0e-13 80.1 68 69.1
Aqoxy3G00948 Aquilegia oxysepala HOM05D006711 ORTHO05D008104 1.3e-13 79.7 68 63.2
EL10Ac5g10797 Beta vulgaris HOM05D006711 ORTHO05D008104 1.3e-13 79.7 89 55.1
MD06G1177900 Malus domestica HOM05D006711 ORTHO05D008104 1.3e-13 79.7 59 71.2
MD14G1184500 Malus domestica HOM05D006711 ORTHO05D008104 1.3e-13 79.7 59 71.2
Manes.14G068400 Manihot esculenta HOM05D006711 ORTHO05D008104 1.3e-13 79.7 68 66.2
PGR044G2080 Punica granatum HOM05D006711 ORTHO05D008104 1.3e-13 79.7 68 66.2
DCAR_011220 Daucus carota HOM05D006711 ORTHO05D008104 2.3e-13 79.0 68 67.6
Duzib084G0075 Durio zibethinus HOM05D006711 ORTHO05D008104 2.3e-13 79.0 68 64.7
TPR.G37552 Trifolium pratense HOM05D006711 ORTHO05D008104 2.3e-13 79.0 68 64.7
Carub.0005s1414 Capsella rubella HOM05D000086 ORTHO05D008104 3.0e-13 78.6 69 65.2
Cc07_g02450 Coffea canephora HOM05D006711 ORTHO05D008104 3.0e-13 78.6 68 66.2
Ca_21901_v3 Cicer arietinum L. HOM05D006711 ORTHO05D008104 3.9e-13 78.2 68 66.2
Lj4g0001750 Lotus japonicus HOM05D006711 ORTHO05D008104 3.9e-13 78.2 68 66.2
Sed0004980 Sechium edule HOM05D006711 ORTHO05D008104 3.9e-13 78.2 59 72.9
TWI15G0492 Tripterygium wilfordii HOM05D006711 ORTHO05D008104 3.9e-13 78.2 59 71.2
FvH4_5g05020 Fragaria vesca HOM05D006711 ORTHO05D008104 5.1e-13 77.8 59 69.5
FAN04G0211 Fragaria x ananassa HOM05D006711 ORTHO05D008104 5.1e-13 77.8 59 69.5
FAN08G2471 Fragaria x ananassa HOM05D006711 ORTHO05D008104 5.1e-13 77.8 59 69.5
FAN13G1278 Fragaria x ananassa HOM05D006711 ORTHO05D008104 5.1e-13 77.8 59 69.5
FAN18G1479 Fragaria x ananassa HOM05D006711 ORTHO05D008104 5.1e-13 77.8 59 69.5
FAN18G2156 Fragaria x ananassa HOM05D006711 ORTHO05D008104 5.1e-13 77.8 59 69.5
Gohir.A12G275900 Gossypium hirsutum HOM05D006711 ORTHO05D008104 5.1e-13 77.8 55 74.5
Gohir.D12G276600 Gossypium hirsutum HOM05D006711 ORTHO05D008104 5.1e-13 77.8 55 74.5
Gorai.008G297100 Gossypium raimondii HOM05D006711 ORTHO05D008104 5.1e-13 77.8 55 74.5
Oeu047317.1 Olea europaea HOM05D006711 ORTHO05D008104 5.1e-13 77.8 68 63.2
PSO478G1559 Papaver somniferum HOM05D006711 ORTHO05D008104 5.1e-13 77.8 68 63.2
SalBow6G5258 Salvia bowleyana HOM05D006711 ORTHO05D008104 5.1e-13 77.8 68 66.2
Migut.N03365 Erythranthe guttata HOM05D006711 ORTHO05D008104 6.7e-13 77.4 68 64.7
Hma1.2p1_0697F.1_g204840 Hydrangea macrophylla HOM05D006711 ORTHO05D008104 6.7e-13 77.4 68 63.2
GSVIVG01032507001 Vitis vinifera HOM05D006711 ORTHO05D008104 6.7e-13 77.4 61 68.9
Psat4g057240 Pisum sativum HOM05D006711 ORTHO05D008104 8.7e-13 77.0 68 64.7
Thecc.03G007500 Theobroma cacao HOM05D006711 ORTHO05D008104 8.7e-13 77.0 57 71.9
CiPaw.11G029900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.1e-12 76.6 71 62.0
ClCG01G014050 Citrullus lanatus HOM05D006711 ORTHO05D008104 1.1e-12 76.6 59 71.2
Ciclev10023110m.g Citrus clementina HOM05D006711 ORTHO05D008104 1.1e-12 76.6 57 71.9
Duzib068G0631 Durio zibethinus HOM05D006711 ORTHO05D008104 1.5e-12 76.3 55 72.7
Prupe.5G177100 Prunus persica HOM05D006711 ORTHO05D008104 1.5e-12 76.3 59 67.8
Potri.012G078000 Populus trichocarpa HOM05D006711 ORTHO05D008104 1.9e-12 75.9 55 72.7
Potri.015G073300 Populus trichocarpa HOM05D006711 ORTHO05D008104 1.9e-12 75.9 55 72.7
THA.LOC104798980 Tarenaya hassleriana HOM05D000086 ORTHO05D008104 1.9e-12 75.9 54 75.9
Aa31LG4G16690 Aethionema arabicum HOM05D006711 ORTHO05D008104 2.5e-12 75.5 60 70.0
AL5G27360 Arabidopsis lyrata HOM05D006711 ORTHO05D008104 2.5e-12 75.5 60 70.0
CARHR156770 Cardamine hirsuta HOM05D006711 ORTHO05D008104 2.5e-12 75.5 60 70.0
Cpa.g.sc134.10 Carica papaya HOM05D006711 ORTHO05D008104 2.5e-12 75.5 55 70.9
Oeu059193.1 Olea europaea HOM05D006711 ORTHO05D008104 2.5e-12 75.5 68 63.2
PSO017G6527 Papaver somniferum HOM05D006711 ORTHO05D008104 2.5e-12 75.5 68 63.2
Sp5g13950 Schrenkiella parvula HOM05D006711 ORTHO05D008104 2.5e-12 75.5 60 70.0
CDE10G0426 Ceratophyllum demersum HOM05D006711 ORTHO05D008104 3.3e-12 75.1 76 57.9
Thhalv10010870m.g Eutrema salsugineum HOM05D006711 ORTHO05D008104 3.3e-12 75.1 68 63.2
Sabra12G0055800 Salix brachista HOM05D006711 ORTHO05D008104 3.3e-12 75.1 55 70.9
THA.LOC104821460 Tarenaya hassleriana HOM05D006711 ORTHO05D008104 3.3e-12 75.1 54 74.1
CsaV3_1G008300 Cucumis sativus L. HOM05D006711 ORTHO05D008104 4.3e-12 74.7 59 71.2
GSVIVG01007800001 Vitis vinifera HOM05D006711 ORTHO05D008104 4.3e-12 74.7 55 69.1
BcaC07g39289 Brassica carinata HOM05D006711 ORTHO05D008104 5.7e-12 74.3 60 70.0
A06p19610 Brassica napus HOM05D006711 ORTHO05D008104 5.7e-12 74.3 60 70.0
C08p22960 Brassica napus HOM05D006711 ORTHO05D008104 5.7e-12 74.3 60 70.0
BolC8t49933H Brassica oleracea HOM05D006711 ORTHO05D008104 5.7e-12 74.3 60 70.0
BraA06t25041Z Brassica rapa HOM05D006711 ORTHO05D008104 5.7e-12 74.3 60 70.0
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 5.7e-12 74.3 72 58.3
COL.COLO4_24770 Corchorus olitorius HOM05D006711 ORTHO05D008104 5.7e-12 74.3 53 75.5
Sabra15G0097500 Salix brachista HOM05D006711 ORTHO05D008104 5.7e-12 74.3 55 72.7
Aa31LG11G810 Aethionema arabicum HOM05D006711 ORTHO05D008104 7.4e-12 73.9 54 74.1
MELO3C002246.2 Cucumis melo HOM05D006711 ORTHO05D008104 7.4e-12 73.9 59 71.2
arahy.Tifrunner.gnm1.ann1.5NY27E Arachis hypogaea HOM05D006711 ORTHO05D008104 9.7e-12 73.6 57 68.4
CANSAT11G1423 Cannabis sativa HOM05D006711 ORTHO05D008104 9.7e-12 73.6 68 63.2
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 9.7e-12 73.6 52 71.2
vmacro05808 Vaccinium macrocarpon HOM05D006711 ORTHO05D008104 1.3e-11 73.2 55 70.9
Atru.chr9.2428 Acer truncatum HOM05D006711 ORTHO05D008104 1.6e-11 72.8 54 72.2
BcaB01g00848 Brassica carinata HOM05D006711 ORTHO05D008104 1.6e-11 72.8 60 68.3
Zm00001eb311470 Zea mays HOM05D006711 ORTHO05D008104 2.2e-11 72.4 65 63.1
Lalb_Chr12g0201501 Lupinus albus HOM05D006711 ORTHO05D008104 3.7e-11 71.6 72 58.3
PSO063G1690 Papaver somniferum HOM05D006711 ORTHO05D008104 3.7e-11 71.6 55 63.6
PSO832G1815 Papaver somniferum HOM05D006711 ORTHO05D008104 3.7e-11 71.6 55 63.6
Nn4g22854 Nelumbo nucifera HOM05D006711 ORTHO05D008104 6.3e-11 70.9 49 73.5
CiPaw.12G024900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.4e-10 69.7 80 56.2
Lsat_1_v5_gn_4_181601 Lactuca sativa HOM05D006711 ORTHO05D008104 1.4e-10 69.7 54 68.5
Actinidia33966 Actinidia chinensis HOM05D006711 ORTHO05D008104 1.8e-10 69.3 68 55.9
HanXRQChr09g0265981 Helianthus annuus HOM05D006711 ORTHO05D008104 1.8e-10 69.3 54 68.5
Os09g0375900 Oryza sativa ssp. japonica HOM05D006711 ORTHO05D008104 2.4e-10 68.9 59 64.4
HanXRQChr12g0385511 Helianthus annuus HOM05D006711 ORTHO05D008104 9.0e-10 67.0 61 59.0
Sopen11g029530 Solanum pennellii HOM05D006711 ORTHO05D008104 2.0e-09 65.9 68 58.8
Peaxi162Scf00429g00118 Petunia axillaris HOM05D006711 ORTHO05D008104 2.6e-09 65.5 68 55.9
Rhsim08G0056600 Rhododendron simsii HOM05D000086 ORTHO05D000983 4.5e-09 64.7 61 57.4
Nitab4.5_0002792g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 7.6e-09 63.9 52 65.4
CAN.G742.33 Capsicum annuum HOM05D006711 ORTHO05D008104 1.0e-08 63.5 68 55.9
SEGI_30617 Sequoiadendron giganteum HOM05D006711 ORTHO05D008104 1.3e-08 63.2 78 48.7
Eucgr.J02179 Eucalyptus grandis HOM05D006711 ORTHO05D008104 2.2e-08 62.4 55 56.4
Nitab4.5_0004762g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 2.2e-08 62.4 52 63.5
CBR_g49624 Chara braunii HOM05D006711 ORTHO05D008104 2.9e-08 62.0 74 50.0
Oeu006591.3 Olea europaea HOM05D006711 ORTHO05D008104 3.8e-08 61.6 91 46.2
unitig_46.g17997 Utricularia gibba HOM05D006711 ORTHO05D008104 1.1e-07 60.1 78 48.7
Haze_07479 Corylus avellana HOM05D006711 ORTHO05D008104 1.4e-07 59.7 42 78.6
RcHm_v2.0_Chr7g0194021 Rosa chinensis HOM05D006711 ORTHO05D008104 9.3e-07 57.0 42 78.6
AagrBONN_evm.TU.Sc2ySwM_368.1224 Anthoceros agrestis HOM05D006711 ORTHO05D008104 1.6e-06 56.2 64 53.1
CSS0024346 Camellia sinensis var. sinensis HOM05D006711 ORTHO05D008104 2.7e-06 55.5 68 55.9
Mapoly0124s0028 Marchantia polymorpha HOM05D006711 ORTHO05D008104 2.7e-06 55.5 88 44.3
Pp3c3_16770 Physcomitrium patens HOM05D006711 ORTHO05D008104 3.6e-06 55.1 67 50.7
Pp3c14_16830 Physcomitrium patens HOM05D006711 ORTHO05D008104 6.1e-06 54.3 68 48.5
QL10p013547 Quercus lobata HOM05D006711 ORTHO05D008104 7.9e-06 53.9 42 71.4


User provided reference genes

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