Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0661G002 Amborella trichopoda HOM05D002354 ORTHO05D002469 2.6e-37 158.3 84 100.0
ATR0559G166 Amborella trichopoda HOM05D002354 ORTHO05D002469 2.1e-15 85.5 89 64.0
RcHm_v2.0_Chr5g0063771 Rosa chinensis HOM05D002354 ORTHO05D002469 1.6e-07 59.3 60 58.3
CiPaw.13G097200 Carya illinoinensis HOM05D002354 ORTHO05D002469 2.1e-07 58.9 72 51.4
Manes.11G132400 Manihot esculenta HOM05D002354 ORTHO05D002469 3.6e-07 58.2 60 56.7
FAN16G1574 Fragaria x ananassa HOM05D002354 ORTHO05D002469 4.7e-07 57.8 60 55.0
MBI14_g11681_MAGBIO Magnolia biondii HOM05D002354 ORTHO05D002469 4.7e-07 57.8 72 50.0
Sopen06g032390 Solanum pennellii HOM05D002354 ORTHO05D002469 4.7e-07 57.8 60 55.0
PGSC0003DMG400030403 Solanum tuberosum HOM05D002354 ORTHO05D002469 4.7e-07 57.8 60 55.0
Actinidia26449 Actinidia chinensis HOM05D002354 ORTHO05D002469 6.2e-07 57.4 60 55.0
FvH4_3g35590 Fragaria vesca HOM05D002354 ORTHO05D002469 6.2e-07 57.4 60 55.0
FAN11G0193 Fragaria x ananassa HOM05D002354 ORTHO05D002469 6.2e-07 57.4 60 55.0
FAN11G3448 Fragaria x ananassa HOM05D002354 ORTHO05D002469 6.2e-07 57.4 60 55.0
FAN21G2655 Fragaria x ananassa HOM05D002354 ORTHO05D002469 6.2e-07 57.4 60 55.0
FAN25G1071 Fragaria x ananassa HOM05D002354 ORTHO05D002469 6.2e-07 57.4 60 55.0
Solyc06g075970.4 Solanum lycopersicum HOM05D002354 ORTHO05D002469 6.2e-07 57.4 60 55.0
Cc01_g12590 Coffea canephora HOM05D002354 ORTHO05D002469 8.1e-07 57.0 60 53.3
Prupe.6G081000 Prunus persica HOM05D002354 ORTHO05D002469 8.1e-07 57.0 60 55.0
Rhsim05G0189900 Rhododendron simsii HOM05D002354 ORTHO05D002469 8.1e-07 57.0 80 45.0
Hund04984 Selenicereus undatus HOM05D002354 ORTHO05D002469 8.1e-07 57.0 60 56.7
Cpa.g.sc190.8 Carica papaya HOM05D002354 ORTHO05D002469 1.1e-06 56.6 60 53.3
Nitab4.5_0001304g0030 Nicotiana tabacum HOM05D002354 ORTHO05D002469 1.1e-06 56.6 60 53.3
THA.LOC104826334 Tarenaya hassleriana HOM05D002354 ORTHO05D002469 1.1e-06 56.6 60 55.0
Nitab4.5_0000610g0020 Nicotiana tabacum HOM05D002354 ORTHO05D002469 1.4e-06 56.2 60 53.3
Nitab4.5_0005251g0010 Nicotiana tabacum HOM05D002354 ORTHO05D002469 1.4e-06 56.2 60 53.3
Peaxi162Scf00406g00316 Petunia axillaris HOM05D002354 ORTHO05D002469 1.4e-06 56.2 60 53.3
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.4e-06 56.2 60 51.7
Actinidia37215 Actinidia chinensis HOM05D002354 ORTHO05D002469 1.8e-06 55.8 82 46.3
Dinv01559 Davidia involucrata HOM05D002354 ORTHO05D002469 1.8e-06 55.8 60 53.3
MD11G1142900 Malus domestica HOM05D002354 ORTHO05D002469 1.8e-06 55.8 60 53.3
Nitab4.5_0007816g0010 Nicotiana tabacum HOM05D002354 ORTHO05D002469 1.8e-06 55.8 60 53.3
Ah.08g219140 Amaranthus hybridus HOM05D002354 ORTHO05D002469 2.4e-06 55.5 60 50.0
CSS0019386 Camellia sinensis var. sinensis HOM05D002354 ORTHO05D002469 2.4e-06 55.5 79 44.3
CAN.G394.45 Capsicum annuum HOM05D002354 ORTHO05D002469 2.4e-06 55.5 60 53.3
Ciclev10030119m.g Citrus clementina HOM05D002354 ORTHO05D002469 3.1e-06 55.1 60 51.7
Eucgr.B02385 Eucalyptus grandis HOM05D002354 ORTHO05D002469 3.1e-06 55.1 60 55.0
TWI31G0008 Tripterygium wilfordii HOM05D002354 ORTHO05D002469 3.1e-06 55.1 60 51.7
PGSC0003DMG400000403 Solanum tuberosum HOM05D002354 ORTHO05D002469 4.0e-06 54.7 60 53.3
Dinv35621 Davidia involucrata HOM05D002354 ORTHO05D002469 5.2e-06 54.3 72 47.2
Peaxi162Scf00679g00213 Petunia axillaris HOM05D002354 ORTHO05D002469 5.2e-06 54.3 60 51.7
THA.LOC104816079 Tarenaya hassleriana HOM05D002354 ORTHO05D002469 5.2e-06 54.3 60 50.0
Atru.chr3.3845 Acer truncatum HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 51.7
CiPaw.14G070500 Carya illinoinensis HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 51.7
Cc08_g08670 Coffea canephora HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 51.7
Dinv37191 Davidia involucrata HOM05D002354 ORTHO05D002469 6.9e-06 53.9 79 43.0
Duzib170G1002 Durio zibethinus HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 51.7
Oeu017095.1 Olea europaea HOM05D002354 ORTHO05D002469 6.9e-06 53.9 68 48.5
Potri.009G028600 Populus trichocarpa HOM05D002354 ORTHO05D002469 6.9e-06 53.9 59 50.8
Rhsim05G0190000 Rhododendron simsii HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 51.7
Solyc11g066140.2 Solanum lycopersicum HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 53.3
Sopen11g025910 Solanum pennellii HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 53.3
Thecc.09G325200 Theobroma cacao HOM05D002354 ORTHO05D002469 6.9e-06 53.9 60 53.3
AL4G23310 Arabidopsis lyrata HOM05D002354 ORTHO05D002469 9.0e-06 53.5 60 51.7
Cfa011471 Carpinus fangiana HOM05D002354 ORTHO05D002469 9.0e-06 53.5 63 47.6
Migut.A00597 Erythranthe guttata HOM05D002354 ORTHO05D002469 9.0e-06 53.5 60 50.0
PGR004G1690 Punica granatum HOM05D002354 ORTHO05D002469 9.0e-06 53.5 60 51.7
Sc01g0004230 Simmondsia chinensis HOM05D002354 ORTHO05D002469 9.0e-06 53.5 60 51.7


User provided reference genes

Program Settings