Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0656G003 Amborella trichopoda HOM05D000090 ORTHO05D001584 3.4e-55 218.0 104 100.0
ATR0584G282 Amborella trichopoda HOM05D000090 ORTHO05D001584 1.0e-22 110.2 58 91.4
ATR0098G001 Amborella trichopoda HOM05D000090 ORTHO05D001584 3.8e-22 108.2 59 88.1
ATR0584G076 Amborella trichopoda HOM05D000090 ORTHO05D001584 5.5e-21 104.4 58 82.8
DCAR_029631 Daucus carota HOM05D000090 ORTHO05D001584 6.7e-11 70.9 67 46.3
Gohir.D11G216700 Gossypium hirsutum HOM05D000090 ORTHO05D001584 1.5e-10 69.7 63 54.0
Gorai.007G232800 Gossypium raimondii HOM05D000090 ORTHO05D001584 1.5e-10 69.7 63 54.0
Prupe.1G179700 Prunus persica HOM05D000090 ORTHO05D001584 2.0e-10 69.3 69 47.8
DCAR_020521 Daucus carota HOM05D000090 ORTHO05D001584 3.3e-10 68.6 57 52.6
Dinv33558 Davidia involucrata HOM05D000090 ORTHO05D001584 4.3e-10 68.2 57 56.1
MD04G1029200 Malus domestica HOM05D000090 ORTHO05D001584 5.7e-10 67.8 63 49.2
Dinv36299 Davidia involucrata HOM05D000090 ORTHO05D001584 7.4e-10 67.4 57 56.1
Atru.chr3.2528 Acer truncatum HOM05D000090 ORTHO05D001584 9.7e-10 67.0 58 53.4
MD04G1029700 Malus domestica HOM05D000090 ORTHO05D001584 9.7e-10 67.0 63 49.2
Medtr5g087620 Medicago truncatula HOM05D000090 ORTHO05D001584 9.7e-10 67.0 63 47.6
Rhsim09G0078400 Rhododendron simsii HOM05D000090 ORTHO05D001584 9.7e-10 67.0 59 47.5
Atru.chr3.1708 Acer truncatum HOM05D000090 ORTHO05D001584 1.3e-09 66.6 58 51.7
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 1.3e-09 66.6 71 42.3
MD04G1030200 Malus domestica HOM05D000090 ORTHO05D001584 1.3e-09 66.6 63 47.6
Nn7g36165 Nelumbo nucifera HOM05D000090 ORTHO05D001584 1.3e-09 66.6 57 57.9
PGR142G4182 Punica granatum HOM05D000090 ORTHO05D001584 1.3e-09 66.6 72 44.4
Thecc.05G193400 Theobroma cacao HOM05D000090 ORTHO05D001584 1.3e-09 66.6 63 47.6
unitig_21.g20330 Utricularia gibba HOM05D000090 ORTHO05D001584 1.3e-09 66.6 59 50.8
Ciclev10017842m.g Citrus clementina HOM05D000090 ORTHO05D001584 1.7e-09 66.2 57 61.4
Lj3A113T89 Lonicera japonica HOM05D000090 ORTHO05D001584 1.7e-09 66.2 70 45.7
MBI18_g33710_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D001584 1.7e-09 66.2 64 53.1
SalBow3G4671 Salvia bowleyana HOM05D000090 ORTHO05D001584 1.7e-09 66.2 66 47.0
MD04G1033600 Malus domestica HOM05D000090 ORTHO05D001584 2.2e-09 65.9 63 47.6
Nitab4.5_0000161g0150 Nicotiana tabacum HOM05D000090 ORTHO05D001584 2.2e-09 65.9 71 49.3
PSO339G0936 Papaver somniferum HOM05D000090 ORTHO05D001584 2.2e-09 65.9 65 50.8
ECA247G1707 Erigeron canadensis HOM05D001504 ORTHO05D001584 2.8e-09 65.5 67 47.8
MD04G1033500 Malus domestica HOM05D000090 ORTHO05D001584 2.8e-09 65.5 63 46.0
PSO541G3412 Papaver somniferum HOM05D000090 ORTHO05D001584 2.8e-09 65.5 68 47.1
RhsimUnG0241200 Rhododendron simsii HOM05D000090 ORTHO05D001584 2.8e-09 65.5 59 47.5
Thecc.09G225100 Theobroma cacao HOM05D000090 ORTHO05D001584 2.8e-09 65.5 57 57.9
TAR636G1828 Trochodendron aralioides HOM05D000090 ORTHO05D001584 2.8e-09 65.5 56 57.1
Ciclev10015019m.g Citrus clementina HOM05D000090 ORTHO05D001584 3.7e-09 65.1 57 59.6
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 3.7e-09 65.1 62 48.4
Hma1.2p1_0412F.1_g147130 Hydrangea macrophylla HOM05D000090 ORTHO05D001584 3.7e-09 65.1 64 45.3
PSO384G1888 Papaver somniferum HOM05D000090 ORTHO05D001584 3.7e-09 65.1 77 48.1
Ciclev10015045m.g Citrus clementina HOM05D000090 ORTHO05D001584 4.8e-09 64.7 57 52.6
Ciclev10017546m.g Citrus clementina HOM05D000090 ORTHO05D001584 4.8e-09 64.7 57 52.6
Duzib177G0208 Durio zibethinus HOM05D000090 ORTHO05D001584 4.8e-09 64.7 63 49.2
Phvul.008G208500 Phaseolus vulgaris HOM05D000090 ORTHO05D001584 4.8e-09 64.7 57 45.6
Phvul.008G208600 Phaseolus vulgaris HOM05D000090 ORTHO05D001584 4.8e-09 64.7 57 45.6
TPR.G22679 Trifolium pratense HOM05D000090 ORTHO05D001584 4.8e-09 64.7 63 47.6
QL01p006080 Quercus lobata HOM05D000090 ORTHO05D001584 6.3e-09 64.3 57 56.1
Glyma.02G273400 Glycine max HOM05D000090 ORTHO05D001584 8.2e-09 63.9 63 46.0
Glyma.14G043700 Glycine max HOM05D000090 ORTHO05D001584 8.2e-09 63.9 63 42.9
Gorai.005G017000 Gossypium raimondii HOM05D000090 ORTHO05D001584 8.2e-09 63.9 64 48.4
Lj3C114T5 Lonicera japonica HOM05D000090 ORTHO05D001584 8.2e-09 63.9 70 40.0
Phvul.008G208400 Phaseolus vulgaris HOM05D000090 ORTHO05D001584 8.2e-09 63.9 60 46.7
PGSC0003DMG400013077 Solanum tuberosum HOM05D000090 ORTHO05D001584 8.2e-09 63.9 71 45.1
CSS0001456 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D001584 1.1e-08 63.5 57 54.4
DCAR_029629 Daucus carota HOM05D000090 ORTHO05D001584 1.1e-08 63.5 68 42.6
Duzib150G1528 Durio zibethinus HOM05D000090 ORTHO05D001584 1.1e-08 63.5 57 56.1
LjContig00564g0020916 Lotus japonicus HOM05D000090 ORTHO05D001584 1.1e-08 63.5 57 49.1
PSO675G2576 Papaver somniferum HOM05D000090 ORTHO05D001584 1.1e-08 63.5 56 53.6
CSS0046735 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D001584 1.4e-08 63.2 58 48.3
Lsat_1_v5_gn_9_26860 Lactuca sativa HOM05D000090 ORTHO05D001584 1.4e-08 63.2 67 46.3
MBI18_g35862_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D001584 1.4e-08 63.2 64 51.6
MD11G1021900 Malus domestica HOM05D000090 ORTHO05D001584 1.4e-08 63.2 57 54.4
MD11G1022200 Malus domestica HOM05D000090 ORTHO05D001584 1.4e-08 63.2 57 54.4
Manes.06G168401 Manihot esculenta HOM05D000090 ORTHO05D001584 1.4e-08 63.2 57 54.4
Rhsim08G0032800 Rhododendron simsii HOM05D000090 ORTHO05D001584 1.4e-08 63.2 59 45.8
Gohir.D02G013500 Gossypium hirsutum HOM05D000090 ORTHO05D001584 1.8e-08 62.8 62 48.4
Lalb_Chr16g0383581 Lupinus albus HOM05D000090 ORTHO05D001584 1.8e-08 62.8 63 46.0
SGA_v2.0_scaffold109G31139 Striga asiatica HOM05D000090 ORTHO05D001584 1.8e-08 62.8 56 50.0
Migut.N00439 Erythranthe guttata HOM05D000090 ORTHO05D001584 2.4e-08 62.4 67 41.8
Peaxi162Scf00423g00076 Petunia axillaris HOM05D000090 ORTHO05D001584 2.4e-08 62.4 71 46.5
Thecc.05G193300 Theobroma cacao HOM05D000090 ORTHO05D001584 2.4e-08 62.4 69 44.9
TPR.G11729 Trifolium pratense HOM05D000090 ORTHO05D001584 2.4e-08 62.4 63 46.0
TWI63G0222 Tripterygium wilfordii HOM05D000090 ORTHO05D001584 2.4e-08 62.4 67 43.3
TWI63G0966 Tripterygium wilfordii HOM05D000090 ORTHO05D001584 2.4e-08 62.4 70 44.3
Ciclev10015021m.g Citrus clementina HOM05D000090 ORTHO05D001584 3.1e-08 62.0 57 57.9
Eucgr.J00809 Eucalyptus grandis HOM05D000090 ORTHO05D001584 3.1e-08 62.0 58 50.0
Gohir.A02G012800 Gossypium hirsutum HOM05D000090 ORTHO05D001584 3.1e-08 62.0 64 46.9
HanXRQChr14g0456111 Helianthus annuus HOM05D000090 ORTHO05D001584 3.1e-08 62.0 68 42.6
Lj3C113T5 Lonicera japonica HOM05D000090 ORTHO05D001584 3.1e-08 62.0 70 41.4
PGR142G2155 Punica granatum HOM05D000090 ORTHO05D001584 3.1e-08 62.0 72 43.1
PSO339G3148 Papaver somniferum HOM05D000090 ORTHO05D001584 4.1e-08 61.6 80 45.0
Ca_06146_v3 Cicer arietinum L. HOM05D000090 ORTHO05D001584 5.3e-08 61.2 58 50.0
Ciclev10015056m.g Citrus clementina HOM05D000090 ORTHO05D001584 5.3e-08 61.2 57 56.1
Ciclev10017937m.g Citrus clementina HOM05D000090 ORTHO05D001584 5.3e-08 61.2 57 56.1
HanXRQChr10g0300761 Helianthus annuus HOM05D000090 ORTHO05D001584 5.3e-08 61.2 71 39.4
Nitab4.5_0007578g0040 Nicotiana tabacum HOM05D000090 ORTHO05D001584 5.3e-08 61.2 71 43.7
Prupe.1G181000 Prunus persica HOM05D000090 ORTHO05D001584 5.3e-08 61.2 69 40.6
TPR.G35347 Trifolium pratense HOM05D000090 ORTHO05D001584 5.3e-08 61.2 63 44.4
Duzib151G0211 Durio zibethinus HOM05D000090 ORTHO05D001584 6.9e-08 60.8 67 46.3
Psat0s921g0160 Pisum sativum HOM05D000090 ORTHO05D001584 6.9e-08 60.8 63 46.0
QL01p006068 Quercus lobata HOM05D000090 ORTHO05D001584 6.9e-08 60.8 56 53.6
Cfa013084 Carpinus fangiana HOM05D000090 ORTHO05D001584 9.1e-08 60.5 63 50.8
Cc03_g10530 Coffea canephora HOM05D000090 ORTHO05D001584 9.1e-08 60.5 63 42.9
Hma1.2p1_0412F.1_g147120 Hydrangea macrophylla HOM05D000090 ORTHO05D001584 9.1e-08 60.5 63 44.4
Lj3C112T7 Lonicera japonica HOM05D000090 ORTHO05D001584 9.1e-08 60.5 70 40.0
PSO384G1784 Papaver somniferum HOM05D000090 ORTHO05D001584 9.1e-08 60.5 63 47.6
Nn1g08238 Nelumbo nucifera HOM05D000090 ORTHO05D001584 1.2e-07 60.1 64 46.9
Lalb_Chr17g0347471 Lupinus albus HOM05D000090 ORTHO05D001584 1.5e-07 59.7 63 46.0
PSO384G2731 Papaver somniferum HOM05D000090 ORTHO05D001584 1.5e-07 59.7 63 42.9
Thecc.04G180500 Theobroma cacao HOM05D000090 ORTHO05D001584 1.5e-07 59.7 72 41.7
Glyma.14G043600 Glycine max HOM05D000090 ORTHO05D001584 2.0e-07 59.3 63 41.3
Nn1g08237 Nelumbo nucifera HOM05D000090 ORTHO05D001584 2.0e-07 59.3 63 46.0
PSO063G2582 Papaver somniferum HOM05D000090 ORTHO05D001584 2.0e-07 59.3 66 43.9
Potri.017G077400 Populus trichocarpa HOM05D000090 ORTHO05D001584 2.0e-07 59.3 73 42.5
Prupe.1G180900 Prunus persica HOM05D000090 ORTHO05D001584 2.0e-07 59.3 69 42.0
vmacro04173 Vaccinium macrocarpon HOM05D000090 ORTHO05D001584 2.0e-07 59.3 57 54.4
GSVIVG01031678001 Vitis vinifera HOM05D000090 ORTHO05D001584 2.0e-07 59.3 63 44.4
PSO170G6077 Papaver somniferum HOM05D000090 ORTHO05D001584 2.6e-07 58.9 68 45.6
QL02p019853 Quercus lobata HOM05D000090 ORTHO05D001584 2.6e-07 58.9 61 49.2
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 2.6e-07 58.9 61 50.8
Cpa.g.sc84.97 Carica papaya HOM05D000090 ORTHO05D001584 3.4e-07 58.5 57 54.4
CiPaw.14G123500 Carya illinoinensis HOM05D000090 ORTHO05D001584 3.4e-07 58.5 56 53.6
Lalb_Chr14g0372261 Lupinus albus HOM05D000090 ORTHO05D001584 3.4e-07 58.5 57 49.1
MBI07_g21070_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D001584 3.4e-07 58.5 61 45.9
QL10p044063 Quercus lobata HOM05D000090 ORTHO05D001584 3.4e-07 58.5 65 41.5
Atru.chr3.2522 Acer truncatum HOM05D000090 ORTHO05D001584 4.5e-07 58.2 57 47.4
Eucgr.H02623 Eucalyptus grandis HOM05D000090 ORTHO05D001584 4.5e-07 58.2 65 44.6
Lj3A145T26 Lonicera japonica HOM05D000090 ORTHO05D001584 4.5e-07 58.2 70 38.6
Lj3C142T0 Lonicera japonica HOM05D000090 ORTHO05D001584 4.5e-07 58.2 70 38.6
Manes.11G113900 Manihot esculenta HOM05D000090 ORTHO05D001584 4.5e-07 58.2 67 46.3
arahy.Tifrunner.gnm1.ann1.KINP4N Arachis hypogaea HOM05D000090 ORTHO05D001584 5.9e-07 57.8 55 43.6
Ciclev10000917m.g Citrus clementina HOM05D000090 ORTHO05D001584 5.9e-07 57.8 72 38.9
Lj3C141T4 Lonicera japonica HOM05D000090 ORTHO05D001584 5.9e-07 57.8 70 38.6
Lj3g0008243 Lotus japonicus HOM05D000090 ORTHO05D001584 5.9e-07 57.8 56 51.8
MBI18_g33704_MAGBIO Magnolia biondii HOM05D000090 ORTHO05D001584 5.9e-07 57.8 59 49.2
Prupe.6G015900 Prunus persica HOM05D000090 ORTHO05D001584 7.7e-07 57.4 57 49.1
SalBow6G1484 Salvia bowleyana HOM05D000090 ORTHO05D001584 7.7e-07 57.4 63 42.9
SEGI_22033 Sequoiadendron giganteum HOM05D000090 ORTHO05D001584 7.7e-07 57.4 62 45.2
Potri.017G077500 Populus trichocarpa HOM05D000090 ORTHO05D001584 1.0e-06 57.0 73 41.1
Aqoxy2G00063 Aquilegia oxysepala HOM05D000090 ORTHO05D001584 1.3e-06 56.6 56 50.0
CiPaw.01G107900 Carya illinoinensis HOM05D000090 ORTHO05D001584 1.3e-06 56.6 66 40.9
PSO339G1624 Papaver somniferum HOM05D000090 ORTHO05D001584 1.3e-06 56.6 63 44.4
Potri.017G077800 Populus trichocarpa HOM05D000090 ORTHO05D001584 1.3e-06 56.6 73 41.1
RcHm_v2.0_Chr0c23g0500711 Rosa chinensis HOM05D000090 ORTHO05D001584 1.3e-06 56.6 63 42.9
RcHm_v2.0_Chr4g0409041 Rosa chinensis HOM05D000090 ORTHO05D001584 1.3e-06 56.6 63 42.9
Potri.001G016300 Populus trichocarpa HOM05D000090 ORTHO05D001584 1.7e-06 56.2 56 51.8
Actinidia06875 Actinidia chinensis HOM05D000090 ORTHO05D001584 2.2e-06 55.8 57 45.6
arahy.Tifrunner.gnm1.ann1.1LFA9Y Arachis hypogaea HOM05D000090 ORTHO05D001584 2.2e-06 55.8 55 45.5
ClCG07G016690 Citrullus lanatus HOM05D000090 ORTHO05D001584 2.2e-06 55.8 58 46.6
Haze_11075 Corylus avellana HOM05D000090 ORTHO05D001584 2.2e-06 55.8 56 48.2
Haze_11076 Corylus avellana HOM05D000090 ORTHO05D001584 2.2e-06 55.8 56 48.2
MELO3C017673.2 Cucumis melo HOM05D000090 ORTHO05D001584 2.2e-06 55.8 57 47.4
Lj2P651T29 Lonicera japonica HOM05D000090 ORTHO05D001584 2.2e-06 55.8 57 47.4
PSO339G1398 Papaver somniferum HOM05D000090 ORTHO05D001584 2.2e-06 55.8 65 46.2
QL01p006056 Quercus lobata HOM05D000090 ORTHO05D001584 2.2e-06 55.8 57 49.1
QL01p006118 Quercus lobata HOM05D000090 ORTHO05D001584 2.2e-06 55.8 56 55.4
Sed0009713 Sechium edule HOM05D000090 ORTHO05D001584 2.2e-06 55.8 67 38.8
TWI60G0827 Tripterygium wilfordii HOM05D000090 ORTHO05D001584 2.2e-06 55.8 57 47.4
Aa31LG9G11030 Aethionema arabicum HOM05D000090 ORTHO05D001322 2.9e-06 55.5 53 49.1
Eucgr.H00443 Eucalyptus grandis HOM05D000090 ORTHO05D001584 2.9e-06 55.5 69 37.7
FvH4_4g11780 Fragaria vesca HOM05D000090 ORTHO05D001584 2.9e-06 55.5 63 41.3
FAN22G0342 Fragaria x ananassa HOM05D000090 ORTHO05D001584 2.9e-06 55.5 63 41.3
Glyma.15G032000 Glycine max HOM05D000090 ORTHO05D001584 2.9e-06 55.5 57 49.1
Lj2P651T15 Lonicera japonica HOM05D000090 ORTHO05D001584 2.9e-06 55.5 57 47.4
Aqoxy1G00209 Aquilegia oxysepala HOM05D000090 ORTHO05D001584 3.8e-06 55.1 57 45.6
AUR62031037 Chenopodium quinoa HOM05D000150 ORTHO05D000108 3.8e-06 55.1 72 36.1
FAN12G4223 Fragaria x ananassa HOM05D000090 ORTHO05D001584 3.8e-06 55.1 63 41.3
Gohir.D08G087300 Gossypium hirsutum HOM05D000090 ORTHO05D001584 3.8e-06 55.1 60 48.3
Gorai.004G091900 Gossypium raimondii HOM05D000090 ORTHO05D001584 3.8e-06 55.1 60 48.3
PSO384G5071 Papaver somniferum HOM05D000090 ORTHO05D001584 3.8e-06 55.1 65 44.6
QL10p044021 Quercus lobata HOM05D000090 ORTHO05D001584 3.8e-06 55.1 68 38.2
CSS0017823 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D001584 5.0e-06 54.7 57 43.9
CSS0037423 Camellia sinensis var. sinensis HOM05D000090 ORTHO05D001584 5.0e-06 54.7 57 43.9
CiPaw.02G059500 Carya illinoinensis HOM05D000090 ORTHO05D001584 5.0e-06 54.7 65 41.5
Ca_01275_v3 Cicer arietinum L. HOM05D000090 ORTHO05D001584 5.0e-06 54.7 57 43.9
Ciclev10015029m.g Citrus clementina HOM05D000090 ORTHO05D001584 5.0e-06 54.7 57 47.4
PSO210G2957 Papaver somniferum HOM05D000090 ORTHO05D001322 5.0e-06 54.7 53 49.1
Rhsim13G0225000 Rhododendron simsii HOM05D000090 ORTHO05D001584 5.0e-06 54.7 58 46.6
RcHm_v2.0_Chr4g0409111 Rosa chinensis HOM05D000090 ORTHO05D001584 5.0e-06 54.7 67 40.3
arahy.Tifrunner.gnm1.ann1.WRGL83 Arachis hypogaea HOM05D000090 ORTHO05D001584 6.5e-06 54.3 57 47.4
CANSAT25G2744 Cannabis sativa HOM05D000090 ORTHO05D001584 6.5e-06 54.3 65 38.5
SEGI_12102 Sequoiadendron giganteum HOM05D000027 ORTHO05D000671 6.5e-06 54.3 55 47.3
Haze_23053 Corylus avellana HOM05D000090 ORTHO05D001584 8.5e-06 53.9 56 53.6
FAN12G2684 Fragaria x ananassa HOM05D000090 ORTHO05D001584 8.5e-06 53.9 63 39.7
Sc17g0001300 Simmondsia chinensis HOM05D000090 ORTHO05D001584 8.5e-06 53.9 86 39.5
TPR.G6904 Trifolium pratense HOM05D000090 ORTHO05D001584 8.5e-06 53.9 57 47.4


User provided reference genes

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