Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.9e-281 971.8 494 100.0
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.5e-172 610.1 451 70.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 7.2e-87 325.5 379 46.4
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.8e-85 320.9 388 46.1
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.1e-82 309.7 400 44.0
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.0e-81 307.4 413 42.4
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 2.2e-80 303.9 408 43.1
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.4e-79 301.2 430 41.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.4e-79 301.2 372 45.2
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 2.5e-79 300.4 382 43.2
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 2.5e-79 300.4 382 43.2
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 3.2e-79 300.1 380 43.9
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 3.2e-79 300.1 400 43.0
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 4.2e-79 299.7 393 44.3
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 7.2e-79 298.9 392 44.4
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 7.2e-79 298.9 388 42.8
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.2e-78 298.1 388 42.8
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.6e-78 297.7 408 43.4
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 3.9e-77 293.1 429 39.9
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 6.7e-77 292.4 393 43.3
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 8.8e-77 292.0 408 42.2
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.1e-76 291.6 388 42.5
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.5e-76 291.2 436 39.7
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.6e-76 290.4 393 42.7
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 9.7e-76 288.5 388 42.3
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.7e-75 287.7 374 42.0
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 2.2e-75 287.3 380 40.8
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 3.7e-75 286.6 410 41.5
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 4.8e-75 286.2 411 41.8
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 8.2e-75 285.4 411 42.3
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.1e-74 283.5 374 43.9
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.1e-74 283.5 417 41.0
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.1e-74 283.1 414 41.1
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 4.1e-74 283.1 413 40.4
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 5.3e-74 282.7 393 41.7
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.0e-74 282.3 370 42.2
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.2e-73 281.6 411 41.1
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 2.6e-73 280.4 436 38.8
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.5e-73 280.0 528 34.3
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 4.5e-73 279.6 386 40.9
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.0e-72 278.5 388 43.0
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 3.8e-72 276.6 386 40.4
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 5.0e-72 276.2 422 40.0
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.5e-72 275.8 412 39.1
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.9e-71 274.2 408 39.5
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.5e-71 273.9 391 41.4
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 7.2e-71 272.3 378 40.5
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 2.7e-70 270.4 392 42.1
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 3.6e-70 270.0 427 38.4
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 1.0e-69 268.5 424 39.2
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.4e-69 268.1 432 38.7
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 2.3e-69 267.3 519 34.5
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 4.0e-69 266.5 400 40.2
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 4.0e-69 266.5 390 40.8
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.2e-69 266.2 430 39.1
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.2e-68 265.0 379 41.4
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.5e-68 264.6 370 42.2
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 2.6e-68 263.8 435 38.2
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 2.6e-68 263.8 448 36.2
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.3e-68 263.5 430 38.4
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 7.5e-68 262.3 372 41.7
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.8e-67 260.4 430 38.4
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 6.3e-67 259.2 365 40.3
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 6.3e-67 259.2 376 40.2
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.1e-66 258.5 407 37.8
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 7.0e-66 255.8 441 36.7
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.0e-65 254.2 372 39.2
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.5e-65 253.1 377 39.5
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 5.9e-65 252.7 405 39.8
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 7.7e-65 252.3 411 37.7
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 5.0e-64 249.6 380 40.0
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.1e-63 248.4 411 39.7
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.1e-63 248.4 441 35.8
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.5e-63 248.1 449 37.2
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.5e-63 248.1 441 37.6
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.5e-63 248.1 449 37.2
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.5e-63 248.1 382 37.7
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.9e-63 247.7 410 37.8
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.9e-63 247.7 426 38.0
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.2e-63 246.9 348 42.2
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.2e-63 246.9 385 39.0
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 4.2e-63 246.5 309 43.4
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 2.1e-62 244.2 466 35.8
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 2.1e-62 244.2 430 38.1
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 2.7e-62 243.8 215 54.0
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 4.7e-62 243.0 427 36.3
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 4.7e-62 243.0 398 36.7
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 6.1e-62 242.7 446 36.8
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.0e-61 241.9 447 36.5
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.0e-61 241.9 379 38.3
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.4e-61 241.5 381 39.4
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.0e-61 240.0 428 36.7
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 5.2e-61 239.6 373 38.1
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 6.8e-61 239.2 510 32.9
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.6e-60 237.3 257 47.9
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 3.4e-60 236.9 368 39.9
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 3.4e-60 236.9 416 38.7
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 7.5e-60 235.7 420 35.7
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.8e-59 233.8 368 39.7
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 8.3e-59 232.3 372 39.5
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.3e-59 232.3 404 38.4
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.4e-58 231.5 385 37.4
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.1e-58 230.3 305 40.3
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.6e-57 228.0 321 38.9
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.6e-57 228.0 426 36.2
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.6e-57 228.0 437 33.9
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.0e-56 225.3 314 39.2
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.7e-56 224.6 394 37.8
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 1.7e-56 224.6 367 39.8
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 5.0e-56 223.0 383 35.2
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.1e-55 221.9 482 33.2
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.5e-55 220.7 222 47.7
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 3.3e-55 220.3 389 37.5
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.2e-54 218.4 401 36.7
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 5.2e-53 213.0 350 38.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.6e-52 210.7 402 36.8
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 3.4e-52 210.3 322 36.6
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 4.9e-51 206.5 453 32.7
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.1e-50 205.3 399 35.6
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.2e-49 201.8 366 35.0
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 5.9e-49 199.5 386 36.3
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.3e-48 197.6 395 34.9
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.6e-47 193.0 281 39.1
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 8.0e-46 189.1 250 40.4
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 8.3e-43 179.1 375 33.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 8.3e-43 179.1 361 33.5
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.6e-41 174.9 217 41.0
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 6.0e-41 172.9 379 33.5
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 8.0e-38 162.5 225 38.7
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.3e-37 161.0 213 39.0
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 9.8e-36 155.6 183 43.7
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.1e-34 152.1 224 38.4
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.2e-33 148.7 226 35.8
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.7e-33 147.5 415 28.0
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 6.6e-32 142.9 390 30.3
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 3.1e-29 134.0 419 30.1
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.1e-26 125.6 241 32.8
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 3.2e-26 124.0 124 48.4
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.6e-25 121.7 271 31.7
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 3.3e-23 114.0 157 38.9
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.3e-23 114.0 203 31.5
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 6.8e-21 106.3 119 48.7
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.2e-20 105.5 116 44.8
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.4e-20 103.6 272 30.5
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-19 101.7 170 35.9
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.9e-19 100.1 105 45.7
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.0e-16 90.9 258 28.7
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 8.7e-16 89.4 217 30.9
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 1.9e-15 88.2 97 44.3
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 6.2e-14 83.2 202 29.7
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 5.8e-12 76.6 214 26.6
Cfa025051 Carpinus fangiana HOM05D004232 ORTHO05D004909 4.9e-11 73.6 342 23.7
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 1.1e-10 72.4 154 31.2
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 3.5e-09 67.4 243 26.3
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 1.0e-08 65.9 236 25.4
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 1.3e-08 65.5 236 25.4
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 1.7e-08 65.1 93 38.7
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 6.6e-08 63.2 242 24.4
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 5.6e-07 60.1 70 50.0
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 9.6e-07 59.3 159 32.7
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 1.3e-06 58.9 193 24.4
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 2.1e-06 58.2 71 35.2
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 2.1e-06 58.2 76 39.5


User provided reference genes

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