Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 8.5e-255 883.2 469 100.0
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.4e-172 609.4 451 70.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.8e-88 330.1 364 46.4
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 8.9e-87 325.1 377 47.5
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 2.6e-86 323.6 372 46.5
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.4e-84 317.8 380 45.3
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.6e-83 314.3 385 45.2
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 1.0e-82 311.6 393 44.5
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.3e-82 311.2 397 44.3
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 1.3e-82 311.2 375 44.8
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 1.3e-82 311.2 375 44.8
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-82 310.8 383 44.9
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.0e-82 310.1 403 44.7
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.1e-82 309.3 375 45.9
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 8.6e-82 308.5 376 46.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 8.6e-82 308.5 374 45.2
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.9e-81 307.4 383 44.9
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 1.6e-80 304.3 393 43.3
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.1e-80 303.9 419 41.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 2.8e-80 303.5 386 45.3
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.1e-79 301.6 419 41.1
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.8e-79 300.8 371 43.9
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 3.1e-79 300.1 396 44.2
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 4.0e-79 299.7 371 43.7
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 8.9e-79 298.5 371 44.2
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.4e-78 296.2 528 35.6
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 5.8e-78 295.8 436 39.2
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 5.8e-78 295.8 396 42.4
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 9.9e-78 295.0 373 44.2
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.7e-77 294.3 397 42.1
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 3.7e-77 293.1 405 42.2
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 8.3e-77 292.0 400 41.5
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 8.3e-77 292.0 371 43.1
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-76 291.6 403 41.4
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.4e-76 291.2 397 41.8
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.2e-76 290.0 379 42.7
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 5.4e-76 289.3 412 41.0
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 7.8e-75 285.4 436 37.8
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.3e-74 284.6 409 38.9
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.0e-74 283.5 514 34.8
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.6e-74 282.3 373 42.1
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.5e-73 281.2 368 43.5
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 3.3e-73 280.0 390 42.1
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 4.3e-73 279.6 427 37.9
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 4.3e-73 279.6 372 44.1
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 9.6e-73 278.5 378 42.1
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.6e-72 277.7 372 41.7
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.8e-72 276.9 365 42.2
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.8e-72 276.9 422 38.9
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 4.7e-72 276.2 428 38.3
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.1e-72 275.4 422 38.9
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 8.1e-72 275.4 422 38.6
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 4.0e-71 273.1 365 41.6
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 5.2e-71 272.7 370 42.4
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 5.2e-71 272.7 369 43.1
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 6.8e-71 272.3 411 40.6
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 2.0e-70 270.8 408 38.0
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 7.6e-70 268.9 429 39.2
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 1.7e-69 267.7 436 38.1
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 2.2e-69 267.3 412 39.6
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.9e-69 266.9 368 41.6
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 4.9e-69 266.2 386 40.2
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 5.4e-68 262.7 426 38.0
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 7.1e-68 262.3 421 37.8
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 9.3e-68 261.9 376 41.2
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.6e-67 261.2 434 36.4
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.6e-67 261.2 334 42.2
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.6e-67 261.2 363 40.2
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.6e-67 261.2 364 40.7
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.7e-67 260.4 372 39.5
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 7.8e-67 258.8 376 40.7
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.3e-66 257.3 365 38.9
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.9e-66 256.5 428 38.3
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 5.1e-66 256.1 372 40.1
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 8.7e-66 255.4 412 39.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.9e-65 254.2 452 36.9
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 3.3e-65 253.4 421 37.5
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 5.6e-65 252.7 418 38.8
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 5.6e-65 252.7 308 45.8
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.3e-65 252.3 367 40.9
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.1e-63 248.4 385 39.2
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.4e-63 248.1 215 55.8
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 4.0e-63 246.5 380 38.4
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.2e-62 245.0 217 53.5
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-62 245.0 303 43.9
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.2e-62 245.0 363 38.8
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 1.5e-62 244.6 499 33.7
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 2.0e-62 244.2 418 38.3
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 2.6e-62 243.8 371 39.6
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 3.4e-62 243.4 428 37.1
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.4e-62 243.4 411 38.2
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 9.9e-62 241.9 361 40.2
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.7e-61 241.1 426 36.4
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 2.2e-61 240.7 450 37.1
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.2e-61 240.7 371 39.4
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 6.4e-61 239.2 444 36.0
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 8.4e-61 238.8 386 39.9
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.1e-60 238.4 371 39.9
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.4e-60 238.0 449 36.7
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.9e-60 237.7 435 36.6
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.9e-60 237.7 435 36.6
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.4e-60 237.3 215 52.6
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 5.4e-60 236.1 483 34.4
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 1.6e-59 234.6 427 34.9
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.3e-58 231.5 303 40.9
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 5.1e-58 229.6 379 38.8
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 6.6e-58 229.2 430 34.7
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.5e-57 227.3 375 39.2
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.8e-55 221.1 437 32.0
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.4e-55 220.7 375 36.5
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 7.6e-54 215.7 371 39.1
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 6.4e-53 212.6 348 37.4
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 6.4e-53 212.6 412 36.2
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 8.4e-53 212.2 442 32.8
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.1e-52 211.8 388 35.6
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.4e-52 211.5 211 46.9
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.3e-50 204.9 209 47.4
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 3.9e-50 203.4 393 36.1
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.5e-49 201.4 365 36.4
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.3e-49 200.3 386 35.0
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 8.1e-48 195.7 367 34.9
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.4e-47 194.1 175 50.9
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 1.5e-46 191.4 375 36.0
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 4.9e-45 186.4 216 42.6
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.5e-45 186.0 387 34.1
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.0e-42 178.7 368 34.2
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 2.1e-40 171.0 372 33.3
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.8e-40 170.6 217 38.7
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.3e-39 166.4 212 40.6
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 8.4e-37 159.1 183 44.3
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 1.4e-36 158.3 259 34.7
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 1.9e-36 157.9 371 31.8
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 3.2e-36 157.1 214 36.0
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.5e-35 153.7 213 39.4
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.4e-30 137.1 364 30.2
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 2.5e-28 131.0 124 52.4
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 2.7e-27 127.5 407 27.5
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 9.7e-25 119.0 242 32.2
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.7e-24 118.2 159 40.3
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.4e-23 114.4 271 32.5
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.9e-23 112.8 116 50.0
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 3.4e-22 110.5 115 50.4
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.2e-21 107.8 196 31.1
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.9e-20 104.8 111 46.8
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 4.4e-17 93.6 102 45.1
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.3e-16 89.7 272 29.8
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 6.3e-16 89.7 268 27.2
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 3.5e-14 84.0 83 56.6
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.5e-14 83.6 206 27.2
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 1.6e-11 75.1 136 33.8
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 4.0e-10 70.5 214 25.7
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 2.6e-09 67.8 287 21.3
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 4.4e-09 67.0 140 32.1
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.7e-08 65.1 213 24.9
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 1.4e-07 62.0 222 22.5
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 1.8e-07 61.6 197 27.9
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 3.1e-07 60.8 142 32.4
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 3.1e-07 60.8 89 36.0
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 9.1e-07 59.3 137 31.4
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 2.0e-06 58.2 137 30.7
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 2.0e-06 58.2 76 39.5
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 4.5e-06 57.0 134 31.3
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 5.9e-06 56.6 91 35.2
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 7.7e-06 56.2 131 29.8


User provided reference genes

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