Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 2.5e-46 188.3 90 100.0
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 6.2e-37 157.1 90 80.0
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.1e-36 156.4 86 81.4
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 2.3e-36 155.2 90 78.9
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 6.8e-36 153.7 90 77.8
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 8.9e-36 153.3 87 80.5
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 1.5e-35 152.5 90 77.8
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.5e-35 152.5 90 78.9
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 3.4e-35 151.4 87 75.9
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 4.4e-35 151.0 90 77.8
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 7.5e-35 150.2 87 77.0
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 7.5e-35 150.2 90 75.6
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.3e-34 149.4 87 78.2
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.3e-34 149.4 90 74.4
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.7e-34 149.1 87 75.9
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.2e-34 148.7 87 79.3
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 3.7e-34 147.9 87 77.0
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 3.7e-34 147.9 87 77.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 3.7e-34 147.9 90 77.8
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.7e-34 147.9 85 77.6
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 4.9e-34 147.5 87 78.2
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 6.4e-34 147.1 90 74.4
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.4e-34 147.1 87 73.6
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 8.3e-34 146.7 90 74.4
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 8.3e-34 146.7 87 74.7
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 8.3e-34 146.7 87 75.9
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.1e-33 146.4 87 74.7
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.9e-33 145.6 86 75.6
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.9e-33 145.6 90 77.8
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.9e-33 145.6 90 73.3
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 2.4e-33 145.2 87 73.6
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.4e-33 145.2 90 73.3
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 2.4e-33 145.2 84 75.0
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 2.4e-33 145.2 84 75.0
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 2.4e-33 145.2 90 72.2
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 3.2e-33 144.8 90 74.4
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 4.1e-33 144.4 87 74.7
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 4.1e-33 144.4 90 74.4
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 4.1e-33 144.4 87 77.0
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 5.4e-33 144.1 90 75.6
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 9.2e-33 143.3 87 78.2
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.2e-32 142.9 86 73.3
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.2e-32 142.9 90 72.2
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 2.1e-32 142.1 90 74.4
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.7e-32 141.7 84 75.0
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 2.7e-32 141.7 87 74.7
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 2.7e-32 141.7 87 74.7
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.5e-32 141.4 85 72.9
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 4.6e-32 141.0 90 72.2
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 6.0e-32 140.6 87 73.6
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.0e-32 140.6 90 71.1
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.8e-32 140.2 90 70.0
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.0e-31 139.8 86 69.8
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.0e-31 139.8 90 70.0
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.0e-31 139.8 90 70.0
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.0e-31 139.8 85 74.1
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.3e-31 139.4 90 68.9
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.3e-31 139.4 87 73.6
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 1.3e-31 139.4 90 71.1
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 2.3e-31 138.7 87 73.6
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.3e-31 138.7 90 68.9
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 3.9e-31 137.9 82 73.2
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 3.9e-31 137.9 85 72.9
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 5.1e-31 137.5 86 69.8
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 8.6e-31 136.7 87 69.0
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.9e-30 135.6 87 70.1
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.3e-30 134.8 90 68.9
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 4.3e-30 134.4 87 67.8
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 7.3e-30 133.7 85 71.8
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 7.3e-30 133.7 87 70.1
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 7.3e-30 133.7 87 65.5
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 7.3e-30 133.7 85 67.1
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 9.5e-30 133.3 87 69.0
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.5e-30 133.3 90 68.9
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 9.5e-30 133.3 90 68.9
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.2e-29 132.9 90 66.7
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.6e-29 132.5 85 70.6
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.6e-29 132.5 87 69.0
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 3.6e-29 131.3 84 69.0
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.1e-29 130.2 85 67.1
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.1e-29 130.2 85 67.1
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.1e-29 130.2 85 67.1
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.4e-28 129.4 90 67.8
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.8e-28 129.0 80 71.2
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.8e-28 129.0 80 71.2
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.3e-28 128.6 88 64.8
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 3.1e-28 128.3 87 66.7
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 4.0e-28 127.9 87 65.5
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 5.2e-28 127.5 90 64.4
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.8e-28 127.1 84 66.7
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 6.8e-28 127.1 90 63.3
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.9e-28 126.7 85 64.7
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.2e-27 126.3 85 64.7
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.5e-27 125.9 85 64.7
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 2.6e-27 125.2 90 63.3
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 2.6e-27 125.2 90 63.3
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 2.6e-27 125.2 90 63.3
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 2.6e-27 125.2 90 63.3
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 2.6e-27 125.2 90 63.3
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 2.6e-27 125.2 90 65.6
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 5.8e-27 124.0 90 62.2
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 7.5e-27 123.6 90 63.3
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 7.5e-27 123.6 87 63.2
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 9.9e-27 123.2 87 63.2
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.3e-26 122.9 90 63.3
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 1.3e-26 122.9 90 64.4
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.7e-26 122.5 90 64.4
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 3.7e-26 121.3 90 62.2
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 3.7e-26 121.3 87 64.4
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 4.9e-26 120.9 90 63.3
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.1e-25 119.8 90 62.2
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 1.4e-25 119.4 90 60.0
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 1.2e-24 116.3 87 59.8
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.2e-24 116.3 90 60.0
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.6e-21 105.9 78 59.0
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 6.2e-21 104.0 65 75.4
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 2.0e-19 99.0 80 53.8
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 7.6e-19 97.1 61 70.5
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 1.7e-18 95.9 75 57.3
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 8.4e-18 93.6 83 51.8
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.1e-17 93.2 59 69.5
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.2e-16 89.7 61 65.6
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.7e-16 88.6 57 63.2
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 2.3e-15 85.5 60 60.0
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.2e-13 79.7 56 62.5
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 2.1e-13 79.0 83 41.0
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 4.7e-13 77.8 43 74.4
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.8e-12 75.9 45 73.3
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 9.9e-11 70.1 43 72.1
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 9.9e-11 70.1 43 72.1
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.3e-10 69.7 58 56.9
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 3.8e-10 68.2 56 57.1
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 6.4e-10 67.4 71 46.5
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 6.4e-10 67.4 71 46.5
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.9e-09 65.9 78 44.9
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.4e-09 64.3 77 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 3.5e-08 61.6 83 36.1
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.0e-07 60.1 80 38.8
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.0e-07 60.1 80 38.8
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 8.7e-07 57.0 89 27.0
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 8.7e-07 57.0 78 38.5


User provided reference genes

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