Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 2.5e-155 552.0 259 100.0
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 7.4e-75 284.6 257 51.4
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.3e-74 283.9 257 54.5
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 2.6e-72 276.2 251 52.6
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.3e-71 273.9 249 53.8
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 2.2e-71 273.1 249 52.6
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 2.9e-71 272.7 251 53.8
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 1.1e-70 270.8 251 53.0
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 1.9e-70 270.0 257 50.2
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 7.1e-70 268.1 257 51.8
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 9.3e-70 267.7 249 54.6
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.6e-69 266.9 251 51.8
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 1.0e-68 264.2 220 56.4
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.3e-68 263.8 254 52.4
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 1.3e-68 263.8 248 50.4
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 1.8e-68 263.5 262 50.0
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.8e-68 263.5 249 51.0
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.8e-68 263.5 257 51.4
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 2.3e-68 263.1 256 49.2
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 3.9e-68 262.3 262 49.6
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.9e-68 262.3 261 49.0
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 3.9e-68 262.3 244 52.0
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 3.3e-67 259.2 261 48.3
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 7.4e-67 258.1 254 53.9
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 2.1e-66 256.5 249 51.8
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 2.8e-66 256.1 223 56.1
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 3.7e-66 255.8 259 49.0
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.8e-66 255.4 260 50.4
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.8e-65 253.4 230 52.6
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.8e-65 253.4 226 54.9
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 2.4e-65 253.1 226 54.9
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 2.4e-65 253.1 259 51.0
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 3.1e-65 252.7 264 47.0
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.0e-65 252.3 226 54.9
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 4.0e-65 252.3 252 47.6
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 4.0e-65 252.3 250 47.6
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 6.9e-65 251.5 255 49.8
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 1.2e-64 250.8 249 50.2
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 1.5e-64 250.4 253 50.6
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.5e-64 250.4 226 54.4
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.5e-64 250.4 255 49.4
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 2.0e-64 250.0 254 47.2
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 2.6e-64 249.6 254 47.2
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 2.6e-64 249.6 215 54.0
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 3.4e-64 249.2 253 47.0
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 4.5e-64 248.8 248 51.2
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 5.8e-64 248.4 249 47.8
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 5.8e-64 248.4 253 47.0
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 5.8e-64 248.4 253 49.0
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 7.6e-64 248.1 248 50.4
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.3e-63 247.3 249 49.0
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 2.2e-63 246.5 258 48.8
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.9e-63 246.1 257 49.0
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 3.8e-63 245.7 251 49.0
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 6.5e-63 245.0 216 54.2
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 1.1e-62 244.2 258 47.7
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.1e-62 244.2 257 45.9
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.1e-62 244.2 268 48.9
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 1.4e-62 243.8 256 46.5
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 1.4e-62 243.8 254 45.7
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 1.4e-62 243.8 249 45.4
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 4.2e-62 242.3 280 43.2
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 9.3e-62 241.1 256 46.1
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 2.1e-61 240.0 258 47.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 3.5e-61 239.2 267 47.2
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 3.5e-61 239.2 258 47.7
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 6.0e-61 238.4 258 47.3
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 1.0e-60 237.7 219 51.6
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.8e-60 236.9 257 45.9
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 1.8e-60 236.9 252 47.6
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 1.8e-60 236.9 263 44.9
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 3.9e-60 235.7 225 50.7
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 6.7e-60 235.0 272 46.3
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 1.5e-59 233.8 256 45.7
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 1.9e-59 233.4 245 48.6
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 5.7e-59 231.9 253 45.8
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 5.7e-59 231.9 260 47.7
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 7.4e-59 231.5 251 45.4
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 9.7e-59 231.1 213 53.1
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 3.7e-58 229.2 203 54.2
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 1.1e-57 227.6 217 52.1
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.8e-57 226.9 230 50.0
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 2.4e-57 226.5 233 50.2
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 9.0e-57 224.6 237 48.1
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.5e-56 223.8 237 47.7
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 5.9e-56 221.9 237 47.7
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 7.7e-56 221.5 212 50.0
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 7.7e-56 221.5 234 47.9
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-55 221.1 238 47.9
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 1.7e-55 220.3 234 48.3
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 1.9e-54 216.9 237 47.7
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 9.4e-54 214.5 251 41.8
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 4.6e-53 212.2 225 46.7
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 3.9e-52 209.1 220 45.9
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.5e-51 206.5 232 47.0
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 1.5e-48 197.2 156 55.8
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.5e-48 197.2 252 45.2
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 3.2e-46 189.5 195 46.2
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 3.6e-45 186.0 208 46.6
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 1.5e-43 180.6 208 45.2
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.3e-42 177.6 242 38.4
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 3.7e-42 176.0 140 55.7
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.0e-39 167.9 176 45.5
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 8.5e-39 164.9 231 41.1
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.4e-36 157.5 171 48.5
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.8e-36 157.1 203 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 2.0e-35 153.7 257 35.0
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 4.4e-35 152.5 219 38.8
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 3.2e-30 136.3 283 31.1
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.8e-25 120.6 136 46.3
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 3.1e-25 119.8 218 33.0
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 4.5e-24 115.9 123 50.4
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 7.7e-24 115.2 237 34.2
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.5e-22 110.2 238 32.4
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.4e-20 104.4 169 35.5
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 9.8e-19 98.2 70 58.6
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 8.3e-18 95.1 127 45.7
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 7.2e-14 82.0 82 53.7
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 4.0e-12 76.3 98 46.9
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 4.0e-12 76.3 106 41.5
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 4.0e-12 76.3 104 40.4
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 3.4e-11 73.2 78 51.3
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 1.1e-09 68.2 305 24.6
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 1.8e-09 67.4 70 50.0
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 7.0e-09 65.5 223 25.6
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 9.2e-09 65.1 102 36.3
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 1.6e-08 64.3 259 26.3
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.6e-08 64.3 118 37.3
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 2.7e-08 63.5 269 24.9
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 3.5e-08 63.2 261 25.7
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 4.5e-08 62.8 271 24.0
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 7.8e-08 62.0 270 21.5
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 1.0e-07 61.6 269 25.7
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 1.3e-07 61.2 269 25.3
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 1.7e-07 60.8 262 25.2
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 2.9e-07 60.1 268 24.3
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 3.9e-07 59.7 262 25.6
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 1.5e-06 57.8 265 22.3
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 1.9e-06 57.4 271 22.5
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 2.5e-06 57.0 267 22.1


User provided reference genes

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