Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 6.9e-119 431.0 282 100.0
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 5.1e-13 79.3 140 38.6
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 5.1e-13 79.3 147 40.1
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.7e-13 79.0 141 38.3
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 8.7e-13 78.6 139 38.1
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 8.7e-13 78.6 143 37.1
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 8.7e-13 78.6 273 26.4
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.5e-12 77.8 150 37.3
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 3.3e-12 76.6 137 38.0
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 3.3e-12 76.6 137 38.0
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 3.3e-12 76.6 150 37.3
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 5.7e-12 75.9 151 37.1
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 9.6e-12 75.1 148 39.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 9.6e-12 75.1 151 37.1
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 9.6e-12 75.1 151 37.1
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 9.6e-12 75.1 141 39.0
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.3e-11 74.7 144 37.5
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 3.7e-11 73.2 140 37.1
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 3.7e-11 73.2 152 36.8
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 3.7e-11 73.2 288 27.8
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 3.7e-11 73.2 145 36.6
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 4.8e-11 72.8 145 36.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 6.3e-11 72.4 154 37.0
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 6.3e-11 72.4 143 36.4
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 6.3e-11 72.4 145 36.6
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 8.2e-11 72.0 104 41.3
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 8.2e-11 72.0 281 25.6
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-10 71.6 139 38.8
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.1e-10 71.6 236 26.3
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.4e-10 71.2 147 34.7
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.8e-10 70.9 161 31.1
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.8e-10 70.9 143 37.1
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 1.8e-10 70.9 151 35.1
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 1.8e-10 70.9 281 26.3
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-10 70.9 143 35.0
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-10 70.9 143 35.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.8e-10 70.9 235 26.4
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 2.4e-10 70.5 140 36.4
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 2.4e-10 70.5 284 25.0
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 2.4e-10 70.5 145 38.6
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 2.4e-10 70.5 281 25.3
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.4e-10 70.5 155 31.6
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 3.1e-10 70.1 135 38.5
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 3.1e-10 70.1 148 33.8
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 4.1e-10 69.7 142 35.9
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 4.1e-10 69.7 147 35.4
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 4.1e-10 69.7 138 35.5
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 4.1e-10 69.7 143 35.7
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 4.1e-10 69.7 286 25.9
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 5.3e-10 69.3 141 37.6
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 5.3e-10 69.3 105 40.0
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 5.3e-10 69.3 148 34.5
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.3e-10 69.3 147 32.7
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 6.9e-10 68.9 151 35.1
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 6.9e-10 68.9 133 37.6
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.0e-10 68.6 131 38.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.2e-09 68.2 154 34.4
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.2e-09 68.2 105 41.0
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 1.2e-09 68.2 104 37.5
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.2e-09 68.2 278 23.7
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.2e-09 68.2 108 40.7
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.5e-09 67.8 99 39.4
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.5e-09 67.8 158 31.0
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 1.5e-09 67.8 108 41.7
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 2.0e-09 67.4 150 34.0
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.0e-09 67.4 150 34.0
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.0e-09 67.4 152 34.9
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 2.0e-09 67.4 104 38.5
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 2.0e-09 67.4 91 42.9
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 2.0e-09 67.4 142 31.7
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.6e-09 67.0 111 38.7
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.6e-09 67.0 111 38.7
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.6e-09 67.0 111 38.7
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.6e-09 67.0 110 36.4
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.4e-09 66.6 151 36.4
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 3.4e-09 66.6 235 23.8
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 3.4e-09 66.6 160 34.4
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 4.5e-09 66.2 111 36.0
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 4.5e-09 66.2 144 34.7
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.9e-09 65.9 157 36.3
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 5.9e-09 65.9 150 34.0
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 7.6e-09 65.5 139 34.5
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 7.6e-09 65.5 146 34.9
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 7.6e-09 65.5 109 39.4
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 7.6e-09 65.5 242 25.6
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.0e-08 65.1 133 33.1
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.3e-08 64.7 143 32.9
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.3e-08 64.7 106 37.7
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 1.7e-08 64.3 123 37.4
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.7e-08 64.3 126 36.5
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 2.9e-08 63.5 158 31.0
Zm00001eb232780 Zea mays HOM05D003370 ORTHO05D003848 2.9e-08 63.5 136 34.6
Zm00001eb273950 Zea mays HOM05D003370 ORTHO05D003848 3.8e-08 63.2 136 35.3
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 6.5e-08 62.4 121 33.1
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 8.4e-08 62.0 147 33.3
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.1e-07 61.6 166 33.1
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.1e-07 61.6 158 32.3
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.1e-07 61.6 158 29.7
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.4e-07 61.2 150 32.7
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-07 61.2 137 39.4
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 1.4e-07 61.2 121 35.5
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.4e-07 61.2 146 34.2
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.4e-07 61.2 145 33.8
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.4e-07 61.2 144 31.2
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.9e-07 60.8 137 35.0
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.9e-07 60.8 163 28.8
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 3.2e-07 60.1 137 33.6
Sed0028071 Sechium edule HOM05D003370 ORTHO05D003848 3.2e-07 60.1 145 33.8
SEGI_10387 Sequoiadendron giganteum HOM05D003370 ORTHO05D003848 3.2e-07 60.1 101 37.6
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 4.2e-07 59.7 144 33.3
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 4.2e-07 59.7 142 28.9
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 5.5e-07 59.3 142 33.8
Os02g0165500 Oryza sativa ssp. japonica HOM05D003370 ORTHO05D003848 5.5e-07 59.3 108 37.0
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 5.5e-07 59.3 144 29.9
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 5.5e-07 59.3 110 33.6
Zm00001eb207420 Zea mays HOM05D003370 ORTHO05D003848 7.2e-07 58.9 106 35.8
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 9.3e-07 58.5 144 29.9
Sed0006922 Sechium edule HOM05D003370 ORTHO05D003848 9.3e-07 58.5 114 35.1
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.2e-06 58.2 158 29.1
Zm00001eb224830 Zea mays HOM05D003370 ORTHO05D003848 1.2e-06 58.2 121 36.4
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 2.7e-06 57.0 97 36.1
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 3.5e-06 56.6 149 32.2
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 3.5e-06 56.6 141 29.1
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 4.6e-06 56.2 149 32.2
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 4.6e-06 56.2 155 31.0
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 4.6e-06 56.2 144 37.5
ClCG11G016320 Citrullus lanatus HOM05D003370 ORTHO05D003848 4.6e-06 56.2 97 40.2
Eucgr.H01652 Eucalyptus grandis HOM05D002458 ORTHO05D002603 4.6e-06 56.2 130 36.2
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 4.6e-06 56.2 154 27.9
Sp3g11120 Schrenkiella parvula HOM05D003370 ORTHO05D003848 4.6e-06 56.2 148 33.8
AT3G12970 Arabidopsis thaliana HOM05D003370 ORTHO05D003848 6.1e-06 55.8 143 34.3
Duzib213G0602 Durio zibethinus HOM05D003370 ORTHO05D003848 6.1e-06 55.8 158 31.6
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 6.1e-06 55.8 153 32.7
Phvul.003G293000 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 6.1e-06 55.8 145 31.7
MSTRG.7055 Avicennia marina HOM05D003370 ORTHO05D003848 7.9e-06 55.5 145 29.7
Carub.0003s1231 Capsella rubella HOM05D003370 ORTHO05D003848 7.9e-06 55.5 135 33.3
CDE04G2574 Ceratophyllum demersum HOM05D003370 ORTHO05D003848 7.9e-06 55.5 113 34.5
CDE06G2593 Ceratophyllum demersum HOM05D003370 ORTHO05D003848 7.9e-06 55.5 122 30.3


User provided reference genes

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