Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2786.1 1400 100.0
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2378.6 1400 84.5
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2375.9 1402 84.1
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2373.6 1400 84.2
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2373.6 1348 86.4
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2372.0 1358 85.6
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2371.7 1357 86.0
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2369.3 1378 84.8
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2368.6 1382 84.7
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2368.2 1358 85.5
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2367.4 1355 85.7
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2362.0 1405 83.5
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2360.5 1400 83.6
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2359.7 1340 86.1
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2359.7 1337 86.2
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2358.6 1337 86.3
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2358.6 1338 86.2
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2358.2 1356 85.4
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2357.0 1400 83.3
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2355.5 1355 85.1
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2353.6 1378 83.9
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2349.7 1355 85.3
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2348.2 1370 84.7
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2347.8 1404 82.6
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2347.4 1340 85.5
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2346.6 1404 82.8
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2346.6 1354 85.2
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2346.2 1354 84.6
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2345.5 1354 84.9
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2345.5 1341 85.6
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2344.3 1337 85.5
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2343.9 1400 82.6
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2343.9 1405 82.6
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2343.5 1354 84.4
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2342.4 1354 85.1
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2341.6 1381 83.0
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2335.8 1401 81.9
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2335.8 1367 84.6
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2335.1 1400 83.3
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2335.1 1355 84.5
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2334.3 1415 81.3
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2330.4 1337 85.0
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2330.4 1340 85.1
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2330.4 1340 85.1
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2330.4 1340 85.0
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2330.1 1341 85.1
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2328.9 1400 82.1
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2328.5 1338 84.9
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2327.4 1400 82.3
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2325.1 1343 84.3
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2325.1 1356 83.9
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2322.0 1356 84.1
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2321.6 1401 82.0
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2321.2 1354 84.0
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2319.3 1381 82.9
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2318.5 1343 84.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2318.1 1381 82.8
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2318.1 1395 82.1
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2316.6 1370 82.8
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2314.7 1354 84.0
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2313.9 1334 85.1
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2313.5 1354 83.5
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2313.5 1354 83.5
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2312.3 1355 83.3
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2312.0 1354 83.5
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2311.2 1337 84.8
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2310.0 1354 83.5
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1353 83.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2308.9 1402 81.5
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2307.3 1346 83.2
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2305.8 1349 83.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2304.6 1343 83.7
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2304.6 1346 83.0
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2304.6 1354 84.1
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2304.2 1343 83.7
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2300.4 1348 83.2
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2298.5 1368 82.4
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2298.1 1354 84.3
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2297.3 1370 82.3
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2295.0 1338 83.6
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2294.2 1381 81.8
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2293.5 1352 82.8
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2292.7 1338 83.3
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2290.4 1456 78.6
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2289.2 1348 82.7
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2288.8 1374 81.7
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2288.8 1374 81.7
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2288.1 1384 81.5
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2287.3 1384 81.5
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2287.3 1384 81.5
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2278.8 1350 83.3
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2274.6 1357 81.8
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2268.0 1338 83.6
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2262.6 1400 81.1
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2261.1 1340 82.9
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2241.1 1354 81.4
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2192.5 1380 79.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2173.3 1336 79.4
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2166.7 1337 80.2
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2160.6 1347 77.1
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2155.9 1378 76.2
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2129.8 1357 76.6
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2129.8 1357 76.6
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2128.6 1360 76.1
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2126.7 1231 84.3
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2116.7 1232 84.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2109.7 1254 83.3
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2063.9 1358 76.8
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1881.3 1332 68.9
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1865.1 1382 70.5
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1859.3 1336 68.6
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1830.5 1079 82.9
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1811.6 1067 83.0
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1781.1 1373 69.3
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1642.9 912 87.9
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1632.1 913 87.1
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1581.6 895 86.8
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1469.5 808 89.1
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1463.7 808 88.1
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1145.2 690 83.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 4.5e-304 1048.5 677 76.7
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 3.9e-287 992.3 671 75.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.1e-284 984.2 571 83.2
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.2e-266 923.3 1201 44.0
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.0e-247 861.3 592 74.2
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 2.0e-203 714.1 433 80.6
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 7.2e-201 705.7 426 80.3
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 2.0e-198 697.6 444 77.9
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.4e-196 691.4 457 76.1
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.8e-196 691.0 398 83.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.7e-173 614.8 1379 32.4
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.9e-156 558.1 1450 29.4
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.0e-113 415.2 1280 27.7
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.3e-88 332.8 174 92.0
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.2e-62 246.5 147 81.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.2e-59 236.5 122 91.0
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 7.8e-46 190.7 107 87.9
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 3.2e-39 168.7 174 55.2
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.5e-30 138.7 139 51.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.3e-28 132.1 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.6e-27 129.8 91 72.5
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.2e-17 97.1 60 80.0


User provided reference genes

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