Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 6.8e-187 657.1 324 100.0
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.8e-100 369.4 257 69.6
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.8e-99 366.7 260 70.0
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.5e-96 357.1 236 74.6
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 7.2e-96 354.8 236 74.2
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 4.7e-95 352.1 248 68.5
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.4e-93 345.5 214 76.6
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 5.7e-93 345.1 277 62.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 5.7e-93 345.1 219 76.3
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 5.7e-93 345.1 355 53.8
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 2.8e-92 342.8 204 77.9
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 2.8e-92 342.8 235 71.1
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 4.9e-92 342.0 326 56.4
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 6.3e-92 341.7 240 68.3
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 8.3e-92 341.3 247 65.6
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 8.3e-92 341.3 247 65.6
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.4e-91 340.5 261 66.3
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 2.4e-91 339.7 237 70.0
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 9.2e-91 337.8 237 66.7
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.2e-90 337.4 263 64.3
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.0e-90 336.7 239 67.4
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 2.0e-90 336.7 251 66.1
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 2.7e-90 336.3 262 65.3
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 3.5e-90 335.9 248 66.5
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 4.5e-90 335.5 250 64.8
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 7.8e-90 334.7 255 64.7
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 7.8e-90 334.7 248 66.1
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 1.3e-89 334.0 240 66.2
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.3e-89 334.0 242 64.9
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.7e-89 333.6 240 66.2
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.7e-89 333.6 240 65.8
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.7e-89 333.6 250 66.0
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.7e-89 333.6 248 66.1
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.7e-89 333.6 222 74.3
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 2.3e-89 333.2 217 73.3
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 2.3e-89 333.2 273 62.3
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 2.9e-89 332.8 259 64.1
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.9e-89 332.8 388 48.5
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 5.0e-89 332.0 217 73.7
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 6.6e-89 331.6 242 64.9
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 6.6e-89 331.6 289 60.6
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.5e-88 330.5 217 74.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.9e-88 330.1 237 65.8
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.9e-88 330.1 217 74.2
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 7.3e-88 328.2 242 63.6
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 7.3e-88 328.2 268 59.3
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 2.1e-87 326.6 244 63.5
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 3.6e-87 325.9 301 55.1
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 8.0e-87 324.7 257 61.1
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-86 323.9 257 61.1
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.8e-86 323.6 248 63.7
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 3.1e-86 322.8 252 63.9
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 3.1e-86 322.8 266 62.0
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 2.0e-85 320.1 258 60.5
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 4.4e-85 318.9 246 64.6
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 9.8e-85 317.8 240 65.8
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.3e-84 317.4 257 63.0
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 2.2e-84 316.6 288 59.0
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 2.2e-84 316.6 237 66.7
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.9e-84 316.2 301 57.1
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 4.9e-84 315.5 271 58.3
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.3e-84 314.7 252 63.5
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.4e-83 313.9 266 60.9
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.4e-83 313.9 237 65.8
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 1.4e-83 313.9 196 75.5
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.2e-83 312.8 333 52.9
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 9.2e-83 311.2 266 59.8
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 2.0e-82 310.1 280 59.3
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 2.7e-82 309.7 223 68.6
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 3.5e-82 309.3 236 66.9
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.6e-82 308.9 271 59.0
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 1.0e-81 307.8 207 68.6
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.3e-81 307.4 283 56.2
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 1.8e-78 297.0 209 69.9
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 1.8e-78 297.0 227 64.3
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.6e-77 293.1 236 64.0
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 2.9e-76 289.7 248 58.9
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 8.3e-76 288.1 258 57.0
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 5.4e-75 285.4 174 78.2
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.0e-73 281.2 236 63.1
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.3e-73 280.8 199 70.4
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 6.6e-73 278.5 231 61.9
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 3.6e-71 272.7 221 61.5
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 3.4e-69 266.2 213 63.4
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 1.6e-66 257.3 240 56.7
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 1.1e-64 251.1 246 56.5
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 4.4e-61 239.2 177 67.8
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 4.6e-58 229.2 225 52.0
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 6.0e-58 228.8 493 34.7
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.5e-56 224.2 221 50.7
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.9e-56 223.8 228 54.4
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 4.8e-55 219.2 170 62.9
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 9.0e-54 214.9 156 66.0
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 1.5e-53 214.2 257 42.8
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.7e-52 210.7 146 71.2
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 2.2e-52 210.3 146 71.2
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.0e-49 201.4 195 49.7
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 3.9e-49 199.5 201 54.2
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 6.2e-47 192.2 224 44.6
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.7e-44 184.1 259 44.8
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 6.4e-44 182.2 264 43.2
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.4e-43 181.0 113 78.8
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 3.0e-41 173.3 156 59.0
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 3.0e-41 173.3 279 41.9
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 5.1e-33 146.0 158 50.0
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 1.6e-31 141.0 259 40.5
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 2.2e-28 130.6 134 54.5
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 1.8e-25 120.9 71 73.2
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 3.0e-25 120.2 206 34.0
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 7.4e-24 115.5 69 71.0
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.6e-18 97.8 57 78.9
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 5.7e-16 89.4 112 50.0
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 6.9e-14 82.4 102 41.2
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 1.5e-13 81.3 168 34.5
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 7.2e-11 72.4 52 61.5
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 2.0e-08 64.3 61 47.5
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 2.0e-08 64.3 49 59.2
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 2.0e-08 64.3 69 42.0
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 2.0e-08 64.3 61 47.5
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.6e-08 63.9 49 59.2
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.6e-08 63.9 49 59.2
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.6e-08 63.9 49 59.2
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.6e-08 63.9 49 59.2
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.6e-08 63.9 49 59.2
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.6e-08 63.9 49 59.2
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 2.6e-08 63.9 49 59.2
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 5.7e-08 62.8 50 64.0
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 7.4e-08 62.4 58 46.6
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 9.7e-08 62.0 58 46.6
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 1.7e-07 61.2 58 46.6
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 1.7e-07 61.2 58 46.6
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 2.2e-07 60.8 56 46.4
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 2.2e-07 60.8 58 44.8
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 2.2e-07 60.8 61 45.9
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 2.2e-07 60.8 58 44.8
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 4.8e-07 59.7 57 45.6
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 6.3e-07 59.3 58 44.8
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 8.2e-07 58.9 61 44.3
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 8.2e-07 58.9 61 44.3
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.4e-06 58.2 44 56.8
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.8e-06 57.8 28 82.1


User provided reference genes

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