Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G298 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.1e-87 326.6 170 100.0
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.6e-65 253.1 241 63.1
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 4.9e-19 98.6 61 73.8
ATR0075G005 Amborella trichopoda HOM05D006887 ORTHO05D004325 3.2e-10 69.3 54 55.6
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 3.0e-08 62.8 84 35.7
COL.COLO4_22397 Corchorus olitorius HOM05D000307 ORTHO05D000166 8.7e-08 61.2 57 52.6
Thhalv10024162m.g Eutrema salsugineum HOM05D000307 ORTHO05D000166 8.7e-08 61.2 92 35.9
PGR042G3771 Punica granatum HOM05D000307 ORTHO05D000166 8.7e-08 61.2 52 53.8
TAR625G0022 Trochodendron aralioides HOM05D000307 ORTHO05D000166 8.7e-08 61.2 66 47.0
Cpa.g.sc0.43 Carica papaya HOM05D000307 ORTHO05D000166 1.1e-07 60.8 51 52.9
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.1e-07 60.8 85 36.5
TAR625G0923 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.9e-07 60.1 55 54.5
MBI10_g26051_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.5e-07 59.7 101 40.6
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.5e-07 59.7 85 35.3
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 3.3e-07 59.3 57 45.6
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 3.3e-07 59.3 99 33.3
Gohir.A02G137901 Gossypium hirsutum HOM05D000307 ORTHO05D000166 3.3e-07 59.3 62 46.8
MBI16_g16371_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 3.3e-07 59.3 85 35.3
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 3.3e-07 59.3 75 41.3
Lalb_Chr02g0147511 Lupinus albus HOM05D000307 ORTHO05D000166 4.3e-07 58.9 48 50.0
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 5.6e-07 58.5 50 56.0
Thecc.01G119800 Theobroma cacao HOM05D000307 ORTHO05D000166 5.6e-07 58.5 60 48.3
Atru.chr6.1084 Acer truncatum HOM05D000307 ORTHO05D000166 7.4e-07 58.2 43 60.5
Atru.chr6.1094 Acer truncatum HOM05D000307 ORTHO05D000166 7.4e-07 58.2 43 60.5
Gohir.D03G048600 Gossypium hirsutum HOM05D000307 ORTHO05D000166 7.4e-07 58.2 57 49.1
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 7.4e-07 58.2 99 36.4
Ciclev10030228m.g Citrus clementina HOM05D000307 ORTHO05D000166 9.6e-07 57.8 47 53.2
Duzib147G0158 Durio zibethinus HOM05D000307 ORTHO05D000166 9.6e-07 57.8 60 46.7
Gorai.003G049800 Gossypium raimondii HOM05D000307 ORTHO05D000166 9.6e-07 57.8 57 49.1
Rhsim13G0222800 Rhododendron simsii HOM05D000307 ORTHO05D000166 1.3e-06 57.4 101 36.6
Cpa.g.c40189 Carica papaya HOM05D000307 ORTHO05D000166 1.6e-06 57.0 86 38.4
CiPaw.03G065100 Carya illinoinensis HOM05D000307 ORTHO05D000166 1.6e-06 57.0 55 49.1
HanXRQChr07g0203621 Helianthus annuus HOM05D000307 ORTHO05D000166 1.6e-06 57.0 51 51.0
QL09p041547 Quercus lobata HOM05D000307 ORTHO05D000166 1.6e-06 57.0 73 42.5
TAR625G0700 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.6e-06 57.0 64 46.9
Atru.chr4.565 Acer truncatum HOM05D000307 ORTHO05D000166 2.1e-06 56.6 49 49.0
Aqoxy5G00359 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 2.1e-06 56.6 110 33.6
Cpa.g.sc117.18 Carica papaya HOM05D000307 ORTHO05D000166 2.1e-06 56.6 74 45.9
MBI10_g35438_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.1e-06 56.6 108 33.3
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.1e-06 56.6 46 45.7
Atru.chr4.561 Acer truncatum HOM05D000307 ORTHO05D000166 2.8e-06 56.2 51 47.1
CSS0035363 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 2.8e-06 56.2 175 31.4
HanXRQChr10g0294541 Helianthus annuus HOM05D000307 ORTHO05D000166 2.8e-06 56.2 59 44.1
HanXRQChr15g0464231 Helianthus annuus HOM05D000307 ORTHO05D000166 2.8e-06 56.2 59 44.1
MBI10_g35437_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.8e-06 56.2 91 37.4
MBI10_g35440_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.8e-06 56.2 102 38.2
Medtr1g114730 Medicago truncatula HOM05D000307 ORTHO05D000166 3.7e-06 55.8 55 47.3
SEGI_05719 Sequoiadendron giganteum HOM05D066287 ORTHO05D000166 3.7e-06 55.8 96 35.4
TAR624G0600 Trochodendron aralioides HOM05D000307 ORTHO05D000166 3.7e-06 55.8 61 47.5
Atru.chr3.1090 Acer truncatum HOM05D000307 ORTHO05D000166 4.8e-06 55.5 149 27.5
Cpa.g.c36543 Carica papaya HOM05D000307 ORTHO05D000166 4.8e-06 55.5 75 41.3
Cfa007888 Carpinus fangiana HOM05D000307 ORTHO05D000166 4.8e-06 55.5 50 52.0
Eucgr.J02348 Eucalyptus grandis HOM05D000307 ORTHO05D000166 4.8e-06 55.5 62 45.2
Gorai.009G216900 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.8e-06 55.5 117 32.5
MBI07_g09577_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 4.8e-06 55.5 65 41.5
Manes.12G002600 Manihot esculenta HOM05D015295 ORTHO05D009969 4.8e-06 55.5 42 61.9
Nn4g25289 Nelumbo nucifera HOM05D000307 ORTHO05D000166 4.8e-06 55.5 105 34.3
Oeu020889.1 Olea europaea HOM05D000307 ORTHO05D000166 4.8e-06 55.5 91 39.6
RcHm_v2.0_Chr1g0346681 Rosa chinensis HOM05D000307 ORTHO05D000166 4.8e-06 55.5 74 43.2
SGA_v2.0_scaffold144G35870 Striga asiatica HOM05D000307 ORTHO05D000166 4.8e-06 55.5 44 54.5
TWI60G1268 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 4.8e-06 55.5 43 58.1
CSS0048763 Camellia sinensis var. sinensis HOM05D000307 ORTHO05D000166 6.2e-06 55.1 47 51.1
Cpa.g.sc117.19 Carica papaya HOM05D000307 ORTHO05D000166 6.2e-06 55.1 76 39.5
Ciclev10027125m.g Citrus clementina HOM05D000307 ORTHO05D000166 6.2e-06 55.1 48 47.9
Medtr6g018920 Medicago truncatula HOM05D000307 ORTHO05D000166 6.2e-06 55.1 55 45.5
Atru.chr12.1732 Acer truncatum HOM05D000307 ORTHO05D000166 8.1e-06 54.7 43 55.8
Carub.0008s1606 Capsella rubella HOM05D000307 ORTHO05D000166 8.1e-06 54.7 53 49.1
MELO3C031794.2 Cucumis melo HOM05D000042 ORTHO05D000028 8.1e-06 54.7 112 33.9
Lalb_Chr05g0223381 Lupinus albus HOM05D000307 ORTHO05D000166 8.1e-06 54.7 50 50.0
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 8.1e-06 54.7 51 45.1
Oeu041404.1 Olea europaea HOM05D000307 ORTHO05D000166 8.1e-06 54.7 46 50.0
Peaxi162Scf00129g00103 Petunia axillaris HOM05D000307 ORTHO05D000166 8.1e-06 54.7 54 46.3
Peaxi162Scf00683g00114 Petunia axillaris HOM05D000307 ORTHO05D000166 8.1e-06 54.7 60 41.7
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 8.1e-06 54.7 61 47.5
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 8.1e-06 54.7 90 35.6


User provided reference genes

Program Settings