Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 6.8e-158 560.8 332 100.0
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 2.3e-113 412.9 330 68.5
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 4.4e-96 355.5 332 56.3
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 5.7e-96 355.1 330 56.1
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.4e-94 350.5 327 55.0
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 2.4e-94 349.7 331 53.5
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.0e-92 344.4 333 53.2
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.3e-92 344.0 334 57.8
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 1.4e-91 340.5 332 53.0
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 5.5e-91 338.6 333 52.3
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 9.4e-91 337.8 327 52.9
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 3.6e-90 335.9 335 51.9
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 3.0e-89 332.8 328 61.9
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 3.9e-89 332.4 329 54.1
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 2.0e-88 330.1 334 52.1
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 3.3e-88 329.3 334 50.6
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 5.7e-88 328.6 334 50.6
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 7.4e-88 328.2 330 53.0
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 9.7e-88 327.8 325 55.4
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.7e-87 327.0 334 52.1
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 2.2e-87 326.6 324 52.8
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 2.8e-87 326.2 328 51.5
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.1e-86 324.3 330 51.5
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.1e-86 324.3 348 49.7
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 2.4e-86 323.2 329 51.7
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 2.4e-86 323.2 328 58.8
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 2.4e-86 323.2 330 51.5
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 4.1e-86 322.4 337 50.7
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 7.0e-86 321.6 327 50.2
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 9.1e-86 321.2 327 56.6
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 1.2e-85 320.9 321 50.2
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 2.6e-85 319.7 320 52.2
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 2.6e-85 319.7 333 50.8
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 4.5e-85 318.9 303 53.8
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 5.9e-85 318.5 335 50.4
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 5.9e-85 318.5 329 52.0
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.0e-84 317.8 334 48.8
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.7e-84 317.0 387 45.7
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 2.2e-84 316.6 328 49.7
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 3.8e-84 315.8 341 49.9
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 5.0e-84 315.5 330 57.3
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 6.5e-84 315.1 234 63.2
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 6.5e-84 315.1 334 48.5
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 8.5e-84 314.7 336 50.6
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 1.1e-83 314.3 328 50.6
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 1.5e-83 313.9 330 50.3
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 7.2e-83 311.6 327 47.7
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 9.4e-83 311.2 327 50.5
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 1.2e-82 310.8 324 49.7
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.6e-82 310.5 321 51.7
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 2.1e-82 310.1 324 49.7
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 2.1e-82 310.1 332 53.0
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 4.7e-82 308.9 334 56.6
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 1.4e-81 307.4 334 56.0
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.8e-81 307.0 324 49.1
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 2.3e-81 306.6 324 48.8
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 5.2e-81 305.4 324 47.2
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 8.8e-81 304.7 320 50.6
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.2e-80 304.3 316 50.0
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 2.0e-80 303.5 324 48.5
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 2.0e-80 303.5 324 48.1
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 4.4e-80 302.4 324 50.9
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 7.5e-80 301.6 336 47.3
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 9.7e-80 301.2 324 48.1
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 1.3e-79 300.8 325 52.3
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.3e-79 300.8 333 56.5
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.3e-79 300.8 334 48.5
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.7e-79 300.4 326 50.9
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 2.2e-79 300.1 325 48.0
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 2.8e-79 299.7 324 48.1
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.1e-78 297.7 321 54.2
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.4e-78 297.4 331 47.1
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 1.4e-78 297.4 324 47.8
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 1.8e-78 297.0 327 48.0
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 4.1e-78 295.8 326 47.5
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 5.3e-78 295.4 318 53.8
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 7.0e-78 295.0 239 57.7
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 9.1e-78 294.7 333 50.2
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.2e-77 294.3 318 50.9
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.2e-77 294.3 323 47.4
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 1.6e-77 293.9 332 48.2
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 2.7e-77 293.1 328 46.6
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 4.5e-77 292.4 327 46.8
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 5.9e-77 292.0 325 52.6
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 7.7e-77 291.6 323 49.8
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 7.7e-77 291.6 326 48.5
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.0e-76 291.2 328 46.0
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 1.0e-76 291.2 324 46.0
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 1.7e-76 290.4 329 53.8
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.7e-76 290.4 244 57.4
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 2.5e-75 286.6 241 56.8
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 2.5e-75 286.6 241 56.8
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 5.5e-75 285.4 324 53.7
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 5.5e-75 285.4 241 56.4
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 5.5e-75 285.4 241 56.4
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 5.5e-75 285.4 324 46.3
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 7.2e-75 285.0 357 51.8
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.6e-74 283.9 322 51.2
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 2.7e-74 283.1 323 51.1
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 3.6e-74 282.7 329 45.6
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.0e-73 281.2 333 52.6
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.2e-73 278.9 244 57.8
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 6.8e-73 278.5 330 50.9
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 2.0e-72 276.9 330 45.8
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 4.4e-72 275.8 282 52.1
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 1.7e-71 273.9 322 51.2
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 1.7e-71 273.9 322 56.2
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 8.3e-71 271.6 332 49.7
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 2.4e-70 270.0 324 50.3
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 1.6e-69 267.3 367 42.0
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 4.5e-69 265.8 329 51.4
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 4.5e-69 265.8 323 45.2
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 5.0e-68 262.3 317 49.5
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 8.6e-68 261.5 304 50.0
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 1.5e-67 260.8 317 44.5
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 3.3e-67 259.6 332 46.1
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 2.1e-66 256.9 321 50.8
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 4.7e-66 255.8 339 45.4
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 7.5e-64 248.4 274 48.5
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 9.8e-64 248.1 328 50.6
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 1.2e-61 241.1 189 60.3
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 5.9e-61 238.8 328 50.3
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 8.6e-60 235.0 191 59.2
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 1.1e-59 234.6 321 44.9
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.9e-59 233.8 329 41.3
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 7.3e-59 231.9 332 39.5
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 1.1e-54 218.0 200 54.0
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 4.1e-54 216.1 316 38.0
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 9.2e-54 214.9 322 37.0
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 2.0e-53 213.8 229 52.4
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 4.3e-51 206.1 281 43.4
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 7.5e-48 195.3 340 37.9
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 2.1e-45 187.2 301 34.9
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 4.6e-45 186.0 135 60.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.7e-44 184.1 411 31.9
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.3e-43 179.5 329 38.9
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 3.4e-40 169.9 144 55.6
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 1.7e-36 157.5 228 41.7
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 3.4e-32 143.3 277 36.5
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.1e-27 128.3 111 59.5
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 1.2e-26 124.8 115 51.3
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 1.2e-26 124.8 229 49.3
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 9.3e-22 108.6 184 35.9
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.8e-17 94.4 79 58.2
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 2.4e-17 94.0 156 36.5
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.2e-16 91.7 187 46.5
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 1.3e-15 88.2 208 32.2
Cre03.g177900 Chlamydomonas reinhardtii HOM05D004681 ORTHO05D005541 3.5e-13 80.1 229 26.6
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 3.3e-11 73.6 244 26.2
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 5.3e-09 66.2 139 33.1
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.0e-08 64.3 122 43.4
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 2.6e-08 63.9 171 28.7
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 4.5e-08 63.2 183 42.1
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 3.2e-06 57.0 121 42.1


User provided reference genes

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