Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G277 Amborella trichopoda HOM05D001253 ORTHO05D001086 5.5e-62 240.7 117 100.0
ATR0626G347 Amborella trichopoda HOM05D001253 ORTHO05D001086 9.8e-27 123.6 106 63.2
ATR0626G360 Amborella trichopoda HOM05D001253 ORTHO05D001086 8.6e-23 110.5 63 81.0
ATR0626G243 Amborella trichopoda HOM05D001253 ORTHO05D001086 7.3e-22 107.5 69 76.8
Rhsim01G0102400 Rhododendron simsii HOM05D001253 ORTHO05D001086 7.3e-14 80.9 69 50.7
vmacro20729 Vaccinium macrocarpon HOM05D001253 ORTHO05D001086 1.1e-12 77.0 78 46.2
CSS0038134 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 1.4e-12 76.6 81 46.9
MSTRG.19415 Avicennia marina HOM05D001253 ORTHO05D001086 1.8e-12 76.3 69 49.3
CSS0048175 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 1.8e-12 76.3 78 44.9
Actinidia02529 Actinidia chinensis HOM05D001253 ORTHO05D001086 2.3e-12 75.9 69 46.4
MSTRG.19416 Avicennia marina HOM05D001253 ORTHO05D001086 3.1e-12 75.5 69 49.3
DCAR_018234 Daucus carota HOM05D001253 ORTHO05D001086 3.4e-11 72.0 83 47.0
Lsat_1_v5_gn_8_160401 Lactuca sativa HOM05D001253 ORTHO05D001086 7.5e-11 70.9 70 48.6
SalBow6G2454 Salvia bowleyana HOM05D001253 ORTHO05D001086 7.5e-11 70.9 80 45.0
Oeu010860.1 Olea europaea HOM05D001253 ORTHO05D001086 9.9e-11 70.5 67 44.8
SGA_v2.0_scaffold31G12708 Striga asiatica HOM05D001253 ORTHO05D001086 9.9e-11 70.5 66 48.5
Migut.J00863 Erythranthe guttata HOM05D001253 ORTHO05D001086 1.7e-10 69.7 69 42.0
TAR625G0877 Trochodendron aralioides HOM05D001253 ORTHO05D001086 1.7e-10 69.7 81 48.1
ECA236G1277 Erigeron canadensis HOM05D001253 ORTHO05D001086 2.2e-10 69.3 79 46.8
DCAR_008902 Daucus carota HOM05D001253 ORTHO05D001086 3.7e-10 68.6 83 43.4
MBI13_g34920_MAGBIO Magnolia biondii HOM05D001253 ORTHO05D001086 3.7e-10 68.6 69 47.8
Lsat_1_v5_gn_8_69720 Lactuca sativa HOM05D000412 ORTHO05D002774 8.3e-10 67.4 79 44.3
TAR362G1205 Trochodendron aralioides HOM05D001253 ORTHO05D001086 8.3e-10 67.4 81 46.9
TAR625G0079 Trochodendron aralioides HOM05D001253 ORTHO05D001086 8.3e-10 67.4 81 46.9
HanXRQChr05g0140311 Helianthus annuus HOM05D001253 ORTHO05D001086 1.1e-09 67.0 79 44.3
HanXRQChr05g0143191 Helianthus annuus HOM05D001253 ORTHO05D001086 1.4e-09 66.6 79 44.3
Lsat_1_v5_gn_7_56580 Lactuca sativa HOM05D001253 ORTHO05D001086 1.4e-09 66.6 68 48.5
Nn5g26952 Nelumbo nucifera HOM05D001253 ORTHO05D001086 1.9e-09 66.2 81 40.7
PGR142G3204 Punica granatum HOM05D001253 ORTHO05D001086 1.9e-09 66.2 81 44.4
Peaxi162Scf00474g00217 Petunia axillaris HOM05D001253 ORTHO05D001086 3.2e-09 65.5 67 40.3
GSVIVG01029447001 Vitis vinifera HOM05D001253 ORTHO05D001086 3.2e-09 65.5 81 42.0
DCAR_012217 Daucus carota HOM05D001253 ORTHO05D001086 5.4e-09 64.7 71 45.1
TAR625G1129 Trochodendron aralioides HOM05D001253 ORTHO05D001086 5.4e-09 64.7 81 45.7
DCAR_008906 Daucus carota HOM05D001253 ORTHO05D001086 7.1e-09 64.3 83 43.4
DCAR_021869 Daucus carota HOM05D001253 ORTHO05D001086 7.1e-09 64.3 83 43.4
PGR031G0425 Punica granatum HOM05D001253 ORTHO05D001086 7.1e-09 64.3 81 45.7
Lj5C350G5 Lonicera japonica HOM05D001253 ORTHO05D001086 9.2e-09 63.9 72 45.8
Cc06_g23500 Coffea canephora HOM05D001253 ORTHO05D001086 1.2e-08 63.5 55 45.5
ECA240G4439 Erigeron canadensis HOM05D001253 ORTHO05D001086 1.2e-08 63.5 67 49.3
Lj5A350G26 Lonicera japonica HOM05D001253 ORTHO05D001086 1.2e-08 63.5 72 45.8
DCAR_008903 Daucus carota HOM05D001253 ORTHO05D001086 1.6e-08 63.2 69 43.5
MBI13_g08746_MAGBIO Magnolia biondii HOM05D001253 ORTHO05D001086 1.6e-08 63.2 69 43.5
MSTRG.19414 Avicennia marina HOM05D001253 ORTHO05D001086 2.1e-08 62.8 61 44.3
HanXRQChr09g0245581 Helianthus annuus HOM05D001253 ORTHO05D001086 2.1e-08 62.8 67 49.3
MBI13_g08751_MAGBIO Magnolia biondii HOM05D001253 ORTHO05D001086 2.1e-08 62.8 69 43.5
GSVIVG01029451001 Vitis vinifera HOM05D001253 ORTHO05D001086 2.1e-08 62.8 63 49.2
HanXRQChr03g0066701 Helianthus annuus HOM05D001253 ORTHO05D001086 2.7e-08 62.4 79 40.5
HanXRQChr09g0245311 Helianthus annuus HOM05D001253 ORTHO05D001086 2.7e-08 62.4 81 44.4
RcHm_v2.0_Chr2g0148381 Rosa chinensis HOM05D001253 ORTHO05D001086 2.7e-08 62.4 73 47.9
ECA236G3343 Erigeron canadensis HOM05D001253 ORTHO05D001086 3.5e-08 62.0 76 43.4
Lj5A351T18 Lonicera japonica HOM05D001253 ORTHO05D001086 3.5e-08 62.0 72 44.4
AUR62039810 Chenopodium quinoa HOM05D001253 ORTHO05D001086 4.6e-08 61.6 78 37.2
Haze_16168 Corylus avellana HOM05D001253 ORTHO05D001086 4.6e-08 61.6 76 43.4
FvH4_6g36390 Fragaria vesca HOM05D001253 ORTHO05D001086 4.6e-08 61.6 73 46.6
FAN14G0611 Fragaria x ananassa HOM05D001253 ORTHO05D001086 4.6e-08 61.6 73 46.6
FAN14G4943 Fragaria x ananassa HOM05D001253 ORTHO05D001086 4.6e-08 61.6 73 46.6
HanXRQChr09g0245601 Helianthus annuus HOM05D001253 ORTHO05D001086 4.6e-08 61.6 67 47.8
Oeu050580.1 Olea europaea HOM05D001253 ORTHO05D001086 4.6e-08 61.6 68 45.6
TAR625G1097 Trochodendron aralioides HOM05D001253 ORTHO05D001086 4.6e-08 61.6 67 47.8
Dinv12633 Davidia involucrata HOM05D001253 ORTHO05D001086 6.0e-08 61.2 55 47.3
Lsat_1_v5_gn_7_56620 Lactuca sativa HOM05D001253 ORTHO05D001086 6.0e-08 61.2 67 46.3
Lsat_1_v5_gn_7_56781 Lactuca sativa HOM05D001253 ORTHO05D001086 6.0e-08 61.2 81 40.7
Lsat_1_v5_gn_7_56801 Lactuca sativa HOM05D001253 ORTHO05D001086 6.0e-08 61.2 81 40.7
QL05p089275 Quercus lobata HOM05D001253 ORTHO05D001086 6.0e-08 61.2 67 44.8
Cfa003440 Carpinus fangiana HOM05D001253 ORTHO05D001086 7.8e-08 60.8 76 43.4
RcHm_v2.0_Chr2g0128251 Rosa chinensis HOM05D001253 ORTHO05D001086 7.8e-08 60.8 73 46.6
GSVIVG01038396001 Vitis vinifera HOM05D001253 ORTHO05D001086 7.8e-08 60.8 65 44.6
GSVIVG01038417001 Vitis vinifera HOM05D001253 ORTHO05D001086 7.8e-08 60.8 65 44.6
GSVIVG01038423001 Vitis vinifera HOM05D001253 ORTHO05D001086 7.8e-08 60.8 65 44.6
FvH4_6g36370 Fragaria vesca HOM05D001253 ORTHO05D001086 1.0e-07 60.5 73 46.6
FvH4_6g36410 Fragaria vesca HOM05D001253 ORTHO05D001086 1.0e-07 60.5 73 46.6
FAN05G2995 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.0e-07 60.5 73 46.6
FAN09G0179 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.0e-07 60.5 73 46.6
FAN09G0690 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.0e-07 60.5 73 46.6
FAN14G4183 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.0e-07 60.5 73 46.6
Lsat_1_v5_gn_7_57060 Lactuca sativa HOM05D001253 ORTHO05D001086 1.0e-07 60.5 62 48.4
QL05p088921 Quercus lobata HOM05D001253 ORTHO05D001086 1.0e-07 60.5 67 44.8
QL05p089338 Quercus lobata HOM05D001253 ORTHO05D001086 1.0e-07 60.5 67 44.8
FAN02G1546 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.3e-07 60.1 89 41.6
QL05p085160 Quercus lobata HOM05D001253 ORTHO05D001086 1.3e-07 60.1 67 44.8
QL05p089202 Quercus lobata HOM05D001253 ORTHO05D001086 1.3e-07 60.1 67 44.8
Solyc02g079490.3 Solanum lycopersicum HOM05D001253 ORTHO05D001086 1.3e-07 60.1 67 46.3
COL.COLO4_26812 Corchorus olitorius HOM05D001253 ORTHO05D001086 1.7e-07 59.7 55 47.3
Hma1.2p1_0252F.1_g102690 Hydrangea macrophylla HOM05D001253 ORTHO05D001086 1.7e-07 59.7 69 40.6
Dinv05664 Davidia involucrata HOM05D001253 ORTHO05D001086 2.3e-07 59.3 69 44.9
Dinv06964 Davidia involucrata HOM05D001253 ORTHO05D001086 2.3e-07 59.3 75 44.0
Dinv13658 Davidia involucrata HOM05D001253 ORTHO05D001086 2.3e-07 59.3 82 42.7
ECA233G1630 Erigeron canadensis HOM05D001253 ORTHO05D001086 2.3e-07 59.3 70 38.6
Peaxi162Scf00985g00017 Petunia axillaris HOM05D001253 ORTHO05D001086 2.3e-07 59.3 67 44.8
TAR383G0117 Trochodendron aralioides HOM05D001253 ORTHO05D001086 2.3e-07 59.3 81 42.0
FAN14G2514 Fragaria x ananassa HOM05D001253 ORTHO05D001086 3.0e-07 58.9 73 45.2
Gohir.A05G116500 Gossypium hirsutum HOM05D001253 ORTHO05D001086 3.0e-07 58.9 64 46.9
Gohir.D05G117300 Gossypium hirsutum HOM05D001253 ORTHO05D001086 3.0e-07 58.9 64 46.9
Gorai.009G121300 Gossypium raimondii HOM05D001253 ORTHO05D001086 3.0e-07 58.9 64 46.9
HanXRQChr09g0245321 Helianthus annuus HOM05D001253 ORTHO05D001086 3.0e-07 58.9 67 43.3
Lj5P349T9 Lonicera japonica HOM05D001253 ORTHO05D001086 3.0e-07 58.9 72 41.7
Dinv13285 Davidia involucrata HOM05D001253 ORTHO05D001086 3.9e-07 58.5 80 40.0
ECA240G1916 Erigeron canadensis HOM05D001253 ORTHO05D001086 3.9e-07 58.5 68 42.6
Lj5A347T28 Lonicera japonica HOM05D001253 ORTHO05D001086 3.9e-07 58.5 81 39.5
Lalb_Chr02g0147061 Lupinus albus HOM05D001253 ORTHO05D001086 3.9e-07 58.5 55 52.7
Nn7g36635 Nelumbo nucifera HOM05D001253 ORTHO05D001086 3.9e-07 58.5 81 40.7
Nn7g36636 Nelumbo nucifera HOM05D001253 ORTHO05D001086 3.9e-07 58.5 81 40.7
Nn7g36637 Nelumbo nucifera HOM05D001253 ORTHO05D001086 3.9e-07 58.5 81 40.7
Nn7g36638 Nelumbo nucifera HOM05D001253 ORTHO05D001086 3.9e-07 58.5 81 40.7
Nn7g37115 Nelumbo nucifera HOM05D001253 ORTHO05D001086 3.9e-07 58.5 76 40.8
SEGI_03929 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 3.9e-07 58.5 81 40.7
Cfa003441 Carpinus fangiana HOM05D001253 ORTHO05D001086 5.1e-07 58.2 67 43.3
Dinv08458 Davidia involucrata HOM05D001253 ORTHO05D001086 5.1e-07 58.2 80 41.2
Duzib192G0356 Durio zibethinus HOM05D001253 ORTHO05D001086 5.1e-07 58.2 65 43.1
Glyma.08G306300 Glycine max HOM05D001253 ORTHO05D001086 5.1e-07 58.2 55 49.1
HanXRQChr05g0140361 Helianthus annuus HOM05D001253 ORTHO05D001086 5.1e-07 58.2 79 41.8
Lj5A348T16 Lonicera japonica HOM05D001253 ORTHO05D001086 5.1e-07 58.2 72 40.3
Prupe.3G027900 Prunus persica HOM05D001253 ORTHO05D001086 5.1e-07 58.2 76 40.8
SEGI_10773 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 5.1e-07 58.2 81 39.5
MSTRG.13167 Avicennia marina HOM05D001253 ORTHO05D001086 6.6e-07 57.8 68 47.1
Dinv01826 Davidia involucrata HOM05D001253 ORTHO05D001086 6.6e-07 57.8 69 43.5
ECA240G4348 Erigeron canadensis HOM05D001253 ORTHO05D001086 6.6e-07 57.8 71 39.4
SEGI_20942 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 6.6e-07 57.8 72 40.3
arahy.Tifrunner.gnm1.ann1.DASS99 Arachis hypogaea HOM05D001253 ORTHO05D001086 8.6e-07 57.4 55 50.9
Duzib192G0058 Durio zibethinus HOM05D001253 ORTHO05D001086 8.6e-07 57.4 76 39.5
Duzib192G1037 Durio zibethinus HOM05D001253 ORTHO05D001086 8.6e-07 57.4 74 41.9
Os04g0609300 Oryza sativa ssp. japonica HOM05D001253 ORTHO05D001086 8.6e-07 57.4 78 42.3
SEGI_01279 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 8.6e-07 57.4 72 40.3
SEGI_34638 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 8.6e-07 57.4 81 39.5
PGSC0003DMG400005060 Solanum tuberosum HOM05D001253 ORTHO05D001086 8.6e-07 57.4 66 43.9
PGSC0003DMG400045667 Solanum tuberosum HOM05D001253 ORTHO05D001086 8.6e-07 57.4 67 44.8
arahy.Tifrunner.gnm1.ann1.BJVR2W Arachis hypogaea HOM05D001253 ORTHO05D001086 1.1e-06 57.0 55 50.9
arahy.Tifrunner.gnm1.ann1.DVBP4U Arachis hypogaea HOM05D001253 ORTHO05D001086 1.1e-06 57.0 65 47.7
EL10Ac8g20478 Beta vulgaris HOM05D001253 ORTHO05D001086 1.1e-06 57.0 78 42.3
CSS0023484 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 1.1e-06 57.0 69 43.5
Dinv13284 Davidia involucrata HOM05D001253 ORTHO05D001086 1.1e-06 57.0 80 38.8
FAN14G1493 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.1e-06 57.0 73 43.8
FAN14G2313 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.1e-06 57.0 73 43.8
Solyc07g014580.3 Solanum lycopersicum HOM05D001253 ORTHO05D001086 1.1e-06 57.0 67 44.8
PGSC0003DMG400005061 Solanum tuberosum HOM05D001253 ORTHO05D001086 1.1e-06 57.0 67 44.8
THA.LOC104813624 Tarenaya hassleriana HOM05D001253 ORTHO05D001086 1.1e-06 57.0 62 41.9
GSVIVG01029446001 Vitis vinifera HOM05D001253 ORTHO05D001086 1.1e-06 57.0 51 49.0
GSVIVG01038414001 Vitis vinifera HOM05D001253 ORTHO05D001086 1.1e-06 57.0 65 43.1
Duzib235G0355 Durio zibethinus HOM05D001253 ORTHO05D001086 1.5e-06 56.6 73 39.7
Phvul.006G024000 Phaseolus vulgaris HOM05D001253 ORTHO05D001086 1.5e-06 56.6 55 50.9
CiPaw.01G209000 Carya illinoinensis HOM05D001253 ORTHO05D001086 1.9e-06 56.2 65 43.1
CiPaw.01G209100 Carya illinoinensis HOM05D001253 ORTHO05D001086 1.9e-06 56.2 65 43.1
Gohir.D05G117100 Gossypium hirsutum HOM05D001253 ORTHO05D001086 1.9e-06 56.2 77 44.2
Hma1.2p1_0252F.1_g102730 Hydrangea macrophylla HOM05D001253 ORTHO05D001086 1.9e-06 56.2 69 37.7
Prupe.3G027700 Prunus persica HOM05D001253 ORTHO05D001086 1.9e-06 56.2 78 41.0
SEGI_22898 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 1.9e-06 56.2 72 37.5
PGSC0003DMG400005058 Solanum tuberosum HOM05D001253 ORTHO05D001086 1.9e-06 56.2 67 44.8
SGA_v2.0_scaffold159G37706 Striga asiatica HOM05D001253 ORTHO05D001086 1.9e-06 56.2 68 47.1
Gorai.009G121100 Gossypium raimondii HOM05D001253 ORTHO05D001086 2.5e-06 55.8 77 44.2
Nitab4.5_0000649g0250 Nicotiana tabacum HOM05D001253 ORTHO05D001086 2.5e-06 55.8 67 44.8
Nitab4.5_0012764g0010 Nicotiana tabacum HOM05D001253 ORTHO05D001086 2.5e-06 55.8 67 44.8
Os04g0609500 Oryza sativa ssp. japonica HOM05D001253 ORTHO05D001086 2.5e-06 55.8 67 44.8
Hund15600 Selenicereus undatus HOM05D001253 ORTHO05D001086 2.5e-06 55.8 68 36.8
SEGI_17644 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 2.5e-06 55.8 63 42.9
CSS0011218 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 3.3e-06 55.5 81 39.5
CANSAT54G2475 Cannabis sativa HOM05D001253 ORTHO05D001086 3.3e-06 55.5 76 38.2
Cpa.g.c46911 Carica papaya HOM05D001253 ORTHO05D001086 3.3e-06 55.5 76 36.8
Cpa.g.c47013 Carica papaya HOM05D001253 ORTHO05D001086 3.3e-06 55.5 76 36.8
DCAR_008905 Daucus carota HOM05D001253 ORTHO05D001086 3.3e-06 55.5 68 38.2
HanXRQChr16g0527341 Helianthus annuus HOM05D001253 ORTHO05D001086 3.3e-06 55.5 66 42.4
SEGI_00313 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 3.3e-06 55.5 66 43.9
SEGI_14614 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 3.3e-06 55.5 81 37.0
COL.COLO4_26815 Corchorus olitorius HOM05D001253 ORTHO05D001086 4.3e-06 55.1 64 45.3
Gohir.A05G116400 Gossypium hirsutum HOM05D001253 ORTHO05D001086 4.3e-06 55.1 74 43.2
Gohir.D05G117200 Gossypium hirsutum HOM05D001253 ORTHO05D001086 4.3e-06 55.1 74 43.2
Gorai.009G121200 Gossypium raimondii HOM05D001253 ORTHO05D001086 4.3e-06 55.1 74 43.2
HanXRQChr03g0066741 Helianthus annuus HOM05D001253 ORTHO05D001086 4.3e-06 55.1 62 43.5
Oeu038200.1 Olea europaea HOM05D001253 ORTHO05D001086 4.3e-06 55.1 68 45.6
SEGI_20386 Sequoiadendron giganteum HOM05D001253 ORTHO05D001086 4.3e-06 55.1 72 38.9
Sopen02g024300 Solanum pennellii HOM05D001253 ORTHO05D001086 4.3e-06 55.1 67 43.3
Thecc.06G049700 Theobroma cacao HOM05D001253 ORTHO05D001086 4.3e-06 55.1 73 38.4
CSS0036048 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 5.6e-06 54.7 79 39.2
CSS0043094 Camellia sinensis var. sinensis HOM05D001253 ORTHO05D001086 5.6e-06 54.7 79 39.2
Eucgr.E02684 Eucalyptus grandis HOM05D001253 ORTHO05D001086 5.6e-06 54.7 74 41.9
Glyma.18G111800 Glycine max HOM05D001253 ORTHO05D001086 5.6e-06 54.7 55 50.9
Gohir.A05G116200 Gossypium hirsutum HOM05D001253 ORTHO05D001086 5.6e-06 54.7 77 42.9
Peaxi162Scf00117g01729 Petunia axillaris HOM05D001253 ORTHO05D001086 5.6e-06 54.7 62 45.2
Solyc07g009583.1 Solanum lycopersicum HOM05D001253 ORTHO05D001086 5.6e-06 54.7 66 42.4
Ciclev10028328m.g Citrus clementina HOM05D001253 ORTHO05D001086 7.3e-06 54.3 73 39.7
THA.LOC104813623 Tarenaya hassleriana HOM05D001253 ORTHO05D001086 7.3e-06 54.3 63 42.9
VMungo0540G0328 Vigna mungo HOM05D001253 ORTHO05D001086 7.3e-06 54.3 69 42.0
arahy.Tifrunner.gnm1.ann1.FV9H5C Arachis hypogaea HOM05D001253 ORTHO05D001086 9.5e-06 53.9 65 43.1
TAR374G1470 Trochodendron aralioides HOM05D001253 ORTHO05D001086 9.5e-06 53.9 67 41.8


User provided reference genes

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