Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 5.2e-294 1014.6 1007 100.0
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 1.7e-58 232.3 1015 49.7
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 1.8e-44 185.7 664 45.5
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 6.9e-44 183.7 660 49.5
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 2.9e-42 178.3 655 52.1
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.1e-41 176.4 658 47.9
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 3.2e-41 174.9 631 43.4
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 8.7e-39 166.8 664 46.5
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 2.8e-37 161.8 663 46.3
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 1.8e-36 159.1 656 40.9
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 1.2e-35 156.4 656 44.8
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.2e-35 156.4 656 44.2
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.2e-35 156.4 656 44.2
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 4.5e-35 154.5 661 43.7
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 4.9e-34 151.0 662 40.6
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.2e-33 148.3 660 44.2
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.2e-32 146.4 650 40.6
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 3.5e-32 144.8 663 44.0
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 6.0e-32 144.1 663 44.5
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.0e-31 143.3 661 40.4
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 1.0e-31 143.3 662 43.1
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.3e-31 142.1 559 47.9
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 1.9e-30 139.0 668 41.3
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 2.8e-29 135.2 650 41.5
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 3.7e-29 134.8 659 42.2
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 6.2e-29 134.0 626 44.4
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 4.0e-28 131.3 362 60.5
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.5e-27 129.4 665 41.2
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 2.0e-27 129.0 658 38.3
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 3.4e-27 128.3 666 41.4
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 4.5e-27 127.9 664 43.1
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 7.6e-27 127.1 668 39.2
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 2.9e-26 125.2 559 46.5
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 8.4e-26 123.6 667 38.8
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 3.2e-25 121.7 658 41.5
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.2e-24 119.8 658 39.8
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.6e-24 119.4 651 33.6
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 1.6e-24 119.4 609 44.2
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 3.5e-24 118.2 652 33.7
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 1.3e-23 116.3 672 41.8
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 1.1e-22 113.2 584 52.9
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 1.5e-22 112.8 650 40.6
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 9.7e-22 110.2 398 54.5
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 9.7e-22 110.2 649 35.9
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 9.7e-22 110.2 663 40.9
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 9.7e-22 110.2 658 38.4
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.2e-21 109.0 630 39.7
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.2e-21 109.0 658 41.8
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 2.4e-20 105.5 655 40.0
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.4e-20 105.5 628 41.9
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 4.1e-20 104.8 561 44.4
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 9.0e-20 103.6 395 54.2
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 1.2e-19 103.2 660 40.8
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.2e-19 103.2 665 40.3
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 1.5e-19 102.8 395 53.4
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 1.5e-19 102.8 663 41.5
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 2.6e-19 102.1 659 43.7
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.3e-18 99.8 332 23.2
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 3.8e-18 98.2 151 37.7
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 3.8e-18 98.2 198 32.8
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 6.5e-18 97.4 323 30.3
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 1.4e-17 96.3 599 48.9
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 1.9e-17 95.9 399 53.9
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 4.2e-17 94.7 336 30.4
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 9.4e-17 93.6 395 52.2
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 1.6e-16 92.8 625 38.7
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 2.1e-16 92.4 401 54.4
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.1e-16 92.4 330 29.1
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 2.7e-16 92.0 396 44.2
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 4.6e-16 91.3 617 41.0
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.4e-15 89.7 649 39.3
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.4e-15 89.7 580 39.8
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 1.8e-15 89.4 630 38.3
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 3.0e-15 88.6 396 54.3
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 3.9e-15 88.2 204 31.9
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 6.7e-15 87.4 631 42.6
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 8.8e-15 87.0 393 53.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 2.0e-14 85.9 333 28.2
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 4.3e-14 84.7 621 38.6
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 5.7e-14 84.3 210 32.9
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 5.7e-14 84.3 210 32.9
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 1.7e-13 82.8 141 34.0
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 8.2e-13 80.5 398 53.8
MD00G1189300 Malus domestica HOM05D008684 ORTHO05D010796 1.4e-12 79.7 209 29.7
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 1.8e-12 79.3 135 35.6
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 2.4e-12 79.0 140 37.1
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 9.1e-12 77.0 141 32.6
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 3.4e-11 75.1 68 55.9
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 3.4e-11 75.1 140 31.4
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 5.9e-11 74.3 69 52.2
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 1.0e-10 73.6 333 21.3
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 2.9e-10 72.0 150 28.7
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 8.5e-10 70.5 151 31.1
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 8.5e-10 70.5 171 27.5
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 1.1e-09 70.1 69 47.8
Thecc.02G293200 Theobroma cacao HOM05D008835 ORTHO05D030527 3.2e-09 68.6 122 30.3
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 4.2e-09 68.2 568 38.0
DCAR_015608 Daucus carota HOM05D007212 ORTHO05D009094 5.5e-09 67.8 121 33.1
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 3.6e-08 65.1 147 28.6
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 6.1e-08 64.3 184 28.3
SGA_v2.0_scaffold32G13356 Striga asiatica HOM05D005622 ORTHO05D002854 6.1e-08 64.3 193 28.5
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 1.0e-07 63.5 147 27.2
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 1.0e-07 63.5 163 27.0
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 1.8e-07 62.8 175 26.3
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 3.0e-07 62.0 140 27.9
Lj3P904T49 Lonicera japonica HOM05D006156 ORTHO05D007699 3.0e-07 62.0 163 23.3
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 3.0e-07 62.0 67 44.8
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.0e-07 62.0 145 26.2
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 5.1e-07 61.2 201 24.4
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 6.7e-07 60.8 131 26.0
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 6.7e-07 60.8 213 22.5
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 6.7e-07 60.8 218 23.4
SGA_v2.0_scaffold32G13359 Striga asiatica HOM05D005622 ORTHO05D002854 6.7e-07 60.8 193 28.0
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 6.7e-07 60.8 191 28.8
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 8.8e-07 60.5 218 23.4
Atru.chr3.1557 Acer truncatum HOM05D008684 ORTHO05D010796 2.0e-06 59.3 199 23.6
Atru.chr3.1578 Acer truncatum HOM05D008684 ORTHO05D010796 2.6e-06 58.9 199 23.6
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 2.6e-06 58.9 149 28.9
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 3.3e-06 58.5 130 29.2
Ciclev10014547m.g Citrus clementina HOM05D007157 ORTHO05D009045 3.3e-06 58.5 144 27.1
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 4.4e-06 58.2 165 24.8
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 4.4e-06 58.2 117 31.6
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 4.4e-06 58.2 146 26.7
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 4.4e-06 58.2 146 26.7
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 4.4e-06 58.2 146 26.7
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 4.4e-06 58.2 152 26.3
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 5.7e-06 57.8 132 27.3
Sopen02g024890 Solanum pennellii HOM05D007956 ORTHO05D010152 5.7e-06 57.8 152 25.7
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 7.4e-06 57.4 132 27.3
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 7.4e-06 57.4 132 27.3
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 9.7e-06 57.0 117 32.5
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 9.7e-06 57.0 148 33.1
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 9.7e-06 57.0 161 27.3
TWI34G0589 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 9.7e-06 57.0 177 22.6
TWI34G1752 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 9.7e-06 57.0 177 22.6
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 9.7e-06 57.0 189 27.0


User provided reference genes

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