Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 2.8e-123 445.3 223 100.0
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 3.0e-77 292.4 196 71.9
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.8e-74 283.1 198 70.2
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 2.3e-72 276.2 198 67.7
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 3.8e-72 275.4 203 68.5
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 5.0e-72 275.0 198 68.2
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 6.6e-72 274.6 198 70.2
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.9e-71 273.1 202 68.3
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 2.5e-71 272.7 203 68.0
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 3.3e-71 272.3 185 71.9
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 4.3e-71 271.9 199 67.3
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 5.6e-71 271.6 187 70.1
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.3e-71 271.2 204 67.2
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 9.5e-71 270.8 199 67.3
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 9.5e-71 270.8 205 70.7
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.8e-70 269.2 186 71.5
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 3.6e-70 268.9 197 67.0
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.6e-70 268.9 186 71.0
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.0e-69 267.3 186 71.0
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 2.3e-69 266.2 187 69.0
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 5.2e-69 265.0 203 63.1
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 6.8e-69 264.6 188 70.2
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 8.9e-69 264.2 197 66.5
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 2.0e-68 263.1 188 66.5
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 2.0e-68 263.1 187 66.8
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 2.6e-68 262.7 186 70.4
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 3.4e-68 262.3 196 66.3
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 9.8e-68 260.8 197 62.4
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 2.2e-67 259.6 196 63.3
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 4.9e-67 258.5 189 65.1
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 6.4e-67 258.1 205 62.0
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 6.4e-67 258.1 200 62.5
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 8.3e-67 257.7 193 65.3
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 8.3e-67 257.7 186 68.8
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 8.3e-67 257.7 215 60.0
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 8.3e-67 257.7 198 64.1
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.1e-66 257.3 201 64.2
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.1e-66 257.3 206 62.1
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.1e-66 257.3 197 66.0
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 3.2e-66 255.8 199 62.3
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 5.4e-66 255.0 209 62.2
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 5.4e-66 255.0 186 68.3
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 5.4e-66 255.0 199 63.8
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 7.0e-66 254.6 195 63.6
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 3.5e-65 252.3 196 62.8
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.7e-64 250.0 198 61.6
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 3.0e-64 249.2 186 65.1
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 3.0e-64 249.2 195 64.1
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 3.9e-64 248.8 200 62.0
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 8.6e-64 247.7 197 58.9
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.5e-63 246.9 188 63.3
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.9e-63 246.5 241 56.8
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.3e-63 245.7 237 54.4
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 5.6e-63 245.0 192 63.5
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 7.3e-63 244.6 192 63.5
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.2e-62 243.8 201 60.2
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.6e-62 243.4 198 59.6
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 4.7e-62 241.9 209 60.8
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 4.7e-62 241.9 215 59.1
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 4.7e-62 241.9 192 60.4
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 6.2e-62 241.5 198 59.1
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.0e-61 240.7 197 58.9
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 1.4e-61 240.4 203 62.1
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.8e-61 240.0 194 61.3
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.0e-60 236.5 231 52.8
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 4.4e-60 235.3 186 62.4
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 5.8e-60 235.0 194 60.3
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 5.8e-60 235.0 194 60.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 5.8e-60 235.0 197 59.9
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 7.5e-60 234.6 186 60.2
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 9.8e-60 234.2 186 59.1
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 1.7e-59 233.4 195 60.5
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 3.7e-59 232.3 188 59.0
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 3.7e-59 232.3 191 61.3
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 4.9e-59 231.9 191 60.7
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 8.3e-59 231.1 191 60.7
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-58 230.7 191 60.2
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 1.1e-58 230.7 191 60.2
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.1e-58 230.7 186 59.1
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 1.9e-58 229.9 284 47.2
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 2.4e-58 229.6 185 61.6
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 3.2e-58 229.2 187 59.4
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 5.4e-58 228.4 196 58.2
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 5.4e-58 228.4 186 60.8
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 6.0e-57 224.9 199 57.8
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.0e-56 224.2 158 70.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.7e-56 223.4 158 70.3
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 2.5e-55 219.5 200 57.5
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 2.5e-55 219.5 199 54.8
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 1.6e-54 216.9 205 54.1
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.7e-54 215.3 295 43.4
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 1.1e-53 214.2 190 58.9
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 1.8e-53 213.4 241 51.9
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.7e-51 206.8 196 56.1
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 2.9e-51 206.1 206 53.4
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 6.4e-51 204.9 157 66.9
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 2.4e-50 203.0 142 66.2
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 7.1e-50 201.4 348 38.2
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 9.2e-50 201.1 187 56.1
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.7e-49 199.5 124 78.2
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 3.9e-48 195.7 151 62.9
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 7.3e-47 191.4 161 62.7
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 1.1e-45 187.6 201 47.8
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.3e-45 186.4 143 67.1
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.4e-42 176.4 190 50.5
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 7.1e-42 174.9 146 61.0
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 9.2e-42 174.5 191 49.2
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 4.6e-41 172.2 213 43.2
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.3e-40 169.9 123 68.3
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.1e-39 167.5 110 73.6
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 1.2e-36 157.5 109 70.6
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 5.1e-32 142.1 192 43.8
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 4.3e-31 139.0 187 41.7
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 7.3e-31 138.3 244 38.1
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 6.2e-30 135.2 122 55.7
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 8.1e-30 134.8 93 74.2
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 2.0e-28 130.2 88 69.3
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 9.3e-26 121.3 133 54.1
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.8e-22 109.8 75 72.0
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.4e-21 107.5 88 63.6
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.1e-18 97.8 196 34.7
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 2.7e-17 93.2 78 56.4
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.9e-16 89.4 150 33.3
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 8.7e-16 88.2 158 35.4
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 7.4e-15 85.1 90 50.0
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.6e-15 84.7 89 48.3
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.6e-15 84.7 89 50.6
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.8e-14 82.4 89 48.3
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 1.0e-11 74.7 66 59.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 2.2e-11 73.6 57 64.9
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 3.2e-10 69.7 54 63.0
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 2.1e-09 67.0 53 60.4
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 2.1e-09 67.0 53 60.4
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 2.1e-09 67.0 53 60.4
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-09 67.0 52 61.5
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 2.1e-09 67.0 107 35.5
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.3e-08 64.3 86 45.3
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.5e-07 60.1 49 61.2


User provided reference genes

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