Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.4e-44 182.6 91 100.0
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.7e-18 95.9 81 63.0
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.3e-13 79.7 80 50.0
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.9e-12 73.9 33 90.9
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.5e-11 72.8 57 57.9
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.0e-11 72.4 39 79.5
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.6e-11 72.0 39 76.9
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.5e-11 71.2 33 84.8
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 5.9e-11 70.9 35 82.9
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.9e-11 70.9 51 60.8
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.9e-11 70.9 47 61.7
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.9e-11 70.9 45 68.9
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.9e-11 70.9 47 61.7
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.9e-11 70.9 53 62.3
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 5.9e-11 70.9 53 62.3
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 7.7e-11 70.5 41 68.3
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.0e-10 70.1 33 84.8
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.0e-10 70.1 33 84.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.0e-10 70.1 66 51.5
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.0e-10 70.1 66 51.5
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.3e-10 69.7 47 61.7
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.3e-10 69.7 39 74.4
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.3e-10 69.7 39 74.4
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.7e-10 69.3 36 75.0
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.7e-10 69.3 42 73.8
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.7e-10 69.3 33 84.8
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.7e-10 69.3 80 45.0
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.2e-10 68.9 43 60.5
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.2e-10 68.9 33 84.8
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.2e-10 68.9 62 59.7
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.9e-10 68.6 42 64.3
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.9e-10 68.6 72 51.4
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 2.9e-10 68.6 33 81.8
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.8e-10 68.2 33 84.8
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 3.8e-10 68.2 80 46.2
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.0e-10 67.8 32 87.5
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.0e-10 67.8 44 63.6
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 5.0e-10 67.8 33 84.8
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 5.0e-10 67.8 33 84.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 6.5e-10 67.4 33 81.8
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 6.5e-10 67.4 34 79.4
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 6.5e-10 67.4 74 48.6
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 6.5e-10 67.4 61 54.1
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 6.5e-10 67.4 61 54.1
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 6.5e-10 67.4 61 54.1
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.5e-10 67.4 35 77.1
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.5e-10 67.4 72 52.8
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.5e-10 67.4 45 64.4
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 6.5e-10 67.4 33 78.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 8.5e-10 67.0 81 45.7
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 8.5e-10 67.0 61 57.4
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 8.5e-10 67.0 59 54.2
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 8.5e-10 67.0 30 90.0
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.4e-09 66.2 33 78.8
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.4e-09 66.2 50 56.0
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.4e-09 66.2 39 69.2
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.9e-09 65.9 62 53.2
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.9e-09 65.9 61 54.1
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.9e-09 65.9 61 54.1
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-09 65.9 33 75.8
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-09 65.9 33 75.8
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.9e-09 65.9 37 78.4
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.5e-09 65.5 51 60.8
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.5e-09 65.5 81 39.5
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.5e-09 65.5 66 47.0
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 3.2e-09 65.1 32 81.2
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 3.2e-09 65.1 33 72.7
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 3.2e-09 65.1 33 75.8
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.2e-09 65.1 33 72.7
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.2e-09 65.1 33 72.7
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.2e-09 65.1 50 60.0
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.2e-09 65.1 48 62.5
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 4.2e-09 64.7 61 55.7
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 4.2e-09 64.7 76 47.4
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.2e-09 64.7 78 42.3
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 4.2e-09 64.7 48 60.4
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.2e-09 64.7 32 81.2
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 5.5e-09 64.3 61 55.7
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 5.5e-09 64.3 61 55.7
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 5.5e-09 64.3 61 55.7
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.5e-09 64.3 33 72.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 5.5e-09 64.3 30 86.7
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.5e-09 64.3 45 57.8
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.5e-09 64.3 31 80.6
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 7.2e-09 63.9 32 78.1
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.2e-09 63.9 45 60.0
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 9.4e-09 63.5 49 61.2
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 9.4e-09 63.5 48 58.3
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 9.4e-09 63.5 32 78.1
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 9.4e-09 63.5 53 56.6
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 9.4e-09 63.5 30 83.3
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 9.4e-09 63.5 33 78.8
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 9.4e-09 63.5 30 83.3
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.4e-09 63.5 51 56.9
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-08 63.2 30 83.3
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.2e-08 63.2 39 61.5
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 1.6e-08 62.8 33 69.7
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-08 62.8 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 1.6e-08 62.8 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 1.6e-08 62.8 30 83.3
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.6e-08 62.8 32 81.2
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 2.1e-08 62.4 90 48.9
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 2.7e-08 62.0 30 83.3
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 2.7e-08 62.0 52 55.8
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.7e-08 62.0 30 76.7
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.7e-08 62.0 29 86.2
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.6e-08 61.6 88 39.8
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 3.6e-08 61.6 102 40.2
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.6e-08 61.6 30 80.0
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 3.6e-08 61.6 49 53.1
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 4.7e-08 61.2 93 43.0
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 4.7e-08 61.2 33 69.7
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 4.7e-08 61.2 82 43.9
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.7e-08 61.2 30 76.7
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 6.1e-08 60.8 30 80.0
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 6.1e-08 60.8 30 80.0
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 6.1e-08 60.8 30 76.7
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 6.1e-08 60.8 29 82.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 7.9e-08 60.5 60 48.3
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 7.9e-08 60.5 91 41.8
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 7.9e-08 60.5 60 53.3
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 7.9e-08 60.5 34 70.6
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.0e-07 60.1 36 69.4
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.0e-07 60.1 61 50.8
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.0e-07 60.1 33 69.7
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.0e-07 60.1 83 44.6
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 1.4e-07 59.7 57 56.1
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.4e-07 59.7 35 68.6
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.4e-07 59.7 79 40.5
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.4e-07 59.7 86 39.5
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.8e-07 59.3 30 80.0
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.8e-07 59.3 79 41.8
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.8e-07 59.3 30 73.3
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 2.3e-07 58.9 61 49.2
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.3e-07 58.9 30 80.0
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 2.3e-07 58.9 40 62.5
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 3.0e-07 58.5 61 49.2
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 3.0e-07 58.5 33 69.7
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 5.1e-07 57.8 50 54.0
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 6.7e-07 57.4 48 52.1
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 6.7e-07 57.4 30 73.3
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 8.8e-07 57.0 84 34.5
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 8.8e-07 57.0 62 48.4
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 8.8e-07 57.0 82 41.5
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.8e-07 57.0 51 49.0
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.8e-07 57.0 65 50.8
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 8.8e-07 57.0 30 70.0
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 8.8e-07 57.0 33 63.6
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 1.1e-06 56.6 82 45.1
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 1.5e-06 56.2 39 56.4
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 2.0e-06 55.8 30 66.7
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 2.0e-06 55.8 82 40.2
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 2.0e-06 55.8 30 66.7
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.6e-06 55.5 50 46.0
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.6e-06 55.5 50 46.0
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 3.3e-06 55.1 81 40.7
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 3.3e-06 55.1 57 47.4
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.3e-06 55.1 34 70.6
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 3.3e-06 55.1 47 51.1
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.7e-06 54.3 65 47.7
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.4e-06 53.9 33 60.6
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 7.4e-06 53.9 32 68.8
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.7e-06 53.5 74 43.2
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 9.7e-06 53.5 48 52.1
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 9.7e-06 53.5 51 47.1


User provided reference genes

Program Settings