Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 8.1e-165 583.9 356 100.0
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.1e-42 176.0 342 33.6
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.9e-41 174.1 343 33.5
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 3.3e-41 173.3 337 34.1
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.6e-40 171.0 328 35.7
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 2.1e-40 170.6 324 36.1
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 4.7e-40 169.5 330 35.5
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 8.1e-40 168.7 339 32.7
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 8.1e-40 168.7 334 32.6
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 1.8e-39 167.5 332 34.9
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 5.2e-39 166.0 332 34.6
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.2e-38 164.9 334 33.5
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 9.9e-38 161.8 338 34.9
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.3e-37 161.4 331 32.0
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 1.7e-37 161.0 353 33.1
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 1.7e-37 161.0 315 33.7
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 2.9e-37 160.2 323 32.8
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 2.9e-37 160.2 317 36.0
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.9e-37 160.2 343 33.2
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 3.8e-37 159.8 323 32.8
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 8.4e-37 158.7 331 34.7
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.1e-36 158.3 343 33.5
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.9e-36 157.5 336 31.5
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 2.4e-36 157.1 348 30.2
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 3.2e-36 156.8 329 33.4
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 7.1e-36 155.6 326 33.7
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 9.3e-36 155.2 318 35.2
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 9.3e-36 155.2 333 32.1
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 1.2e-35 154.8 333 30.9
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 1.2e-35 154.8 334 32.0
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 1.6e-35 154.5 332 32.2
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 1.6e-35 154.5 333 31.8
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 1.6e-35 154.5 316 32.9
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 2.1e-35 154.1 342 33.6
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 2.1e-35 154.1 317 34.1
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 3.5e-35 153.3 330 31.5
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 3.5e-35 153.3 327 34.6
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 6.0e-35 152.5 324 33.6
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 6.0e-35 152.5 337 32.3
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 7.8e-35 152.1 334 30.8
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 7.8e-35 152.1 353 29.7
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 1.0e-34 151.8 334 31.1
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 1.0e-34 151.8 338 33.7
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 2.3e-34 150.6 336 32.4
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 2.3e-34 150.6 326 31.6
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 3.9e-34 149.8 358 30.2
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 5.1e-34 149.4 336 32.1
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 6.6e-34 149.1 349 29.8
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 1.5e-33 147.9 331 30.8
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 1.9e-33 147.5 342 32.2
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 2.5e-33 147.1 317 32.2
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 2.5e-33 147.1 346 29.5
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 3.3e-33 146.7 343 33.5
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 4.3e-33 146.4 325 32.0
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 4.3e-33 146.4 358 29.9
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 9.6e-33 145.2 339 31.9
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 9.6e-33 145.2 333 32.1
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 9.6e-33 145.2 358 29.3
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 1.3e-32 144.8 330 32.7
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 2.1e-32 144.1 319 31.7
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 2.8e-32 143.7 339 32.7
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 2.8e-32 143.7 325 31.4
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 3.6e-32 143.3 331 30.2
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 3.6e-32 143.3 335 31.6
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 4.8e-32 142.9 333 32.7
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 8.1e-32 142.1 317 32.5
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 1.8e-31 141.0 326 32.2
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 3.1e-31 140.2 338 32.0
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 3.1e-31 140.2 317 32.5
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 3.1e-31 140.2 317 32.8
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 4.0e-31 139.8 112 58.0
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 6.9e-31 139.0 317 32.8
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 6.9e-31 139.0 333 30.0
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 9.0e-31 138.7 342 31.0
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 3.4e-30 136.7 332 31.0
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 5.8e-30 136.0 346 30.9
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 1.3e-29 134.8 319 31.0
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 1.3e-29 134.8 322 31.7
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 1.3e-29 134.8 319 31.0
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 2.2e-29 134.0 324 31.5
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 1.1e-28 131.7 317 30.9
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 1.9e-28 131.0 321 31.8
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 3.2e-28 130.2 320 31.2
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 4.2e-28 129.8 313 32.6
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 4.2e-28 129.8 114 55.3
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 7.1e-28 129.0 324 31.2
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 7.1e-28 129.0 323 30.3
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 2.7e-27 127.1 331 29.9
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.7e-27 127.1 114 53.5
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 6.7e-26 122.5 117 56.4
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 5.6e-25 119.4 100 56.0
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 9.9e-22 108.6 128 46.1
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 1.6e-19 101.3 114 48.2
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 6.0e-19 99.4 122 45.1
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 1.0e-18 98.6 93 49.5
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 8.1e-16 89.0 98 46.9
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 6.5e-13 79.3 94 43.6
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.1e-12 78.6 114 41.2
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 9.3e-12 75.5 117 41.0
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 2.1e-11 74.3 104 37.5
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 8.7e-10 68.9 75 45.3
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 1.6e-08 64.7 50 60.0
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 7.6e-06 55.8 103 35.0


User provided reference genes

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