Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.1e-120 435.6 208 100.0
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.8e-77 292.4 195 69.7
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.2e-74 282.7 209 65.1
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 4.2e-73 278.5 196 64.8
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 2.7e-72 275.8 194 65.5
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.2e-70 270.4 193 62.2
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 3.4e-70 268.9 194 61.3
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 5.7e-70 268.1 193 61.1
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 7.5e-70 267.7 193 63.2
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 2.2e-69 266.2 197 58.9
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 2.8e-69 265.8 193 63.2
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 2.8e-69 265.8 194 60.8
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 3.7e-69 265.4 196 60.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 4.8e-69 265.0 196 59.7
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 6.3e-69 264.6 196 60.2
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.8e-68 263.1 194 60.8
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 2.4e-68 262.7 193 62.2
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 2.4e-68 262.7 193 61.1
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 3.1e-68 262.3 193 62.2
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 4.1e-68 261.9 191 62.3
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 4.1e-68 261.9 192 60.4
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 5.4e-68 261.5 196 59.7
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 7.0e-68 261.2 193 61.7
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 7.0e-68 261.2 193 61.1
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.2e-67 260.4 194 62.4
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 2.0e-67 259.6 193 60.1
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 4.5e-67 258.5 194 59.8
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 5.9e-67 258.1 193 60.1
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 5.9e-67 258.1 193 58.5
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 7.7e-67 257.7 193 58.5
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 7.7e-67 257.7 193 58.5
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 7.7e-67 257.7 198 58.6
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 7.7e-67 257.7 198 58.6
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.0e-66 257.3 194 61.3
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 1.3e-66 256.9 194 62.4
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 1.3e-66 256.9 194 60.3
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.7e-66 256.5 193 58.0
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.7e-66 256.5 194 60.3
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 2.9e-66 255.8 193 59.6
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.9e-66 255.8 165 69.1
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 3.8e-66 255.4 193 60.1
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 5.0e-66 255.0 194 59.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 6.6e-66 254.6 193 59.1
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 6.6e-66 254.6 194 59.3
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 6.6e-66 254.6 193 59.1
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 6.6e-66 254.6 193 57.5
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.1e-65 253.8 192 58.9
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.1e-65 253.8 194 60.3
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.5e-65 253.4 194 58.8
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.5e-65 253.4 193 59.6
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.9e-65 253.1 193 57.0
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.9e-65 253.1 193 57.5
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.9e-65 253.1 194 61.3
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 1.9e-65 253.1 193 60.1
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.9e-65 253.1 196 57.7
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 2.5e-65 252.7 193 60.6
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 2.5e-65 252.7 193 61.1
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 3.3e-65 252.3 193 58.0
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.3e-65 252.3 200 58.5
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 4.2e-65 251.9 193 59.6
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 4.2e-65 251.9 195 59.0
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 4.2e-65 251.9 193 59.6
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 4.2e-65 251.9 193 57.5
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 5.5e-65 251.5 193 56.0
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 5.5e-65 251.5 193 57.5
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 5.5e-65 251.5 193 60.1
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 9.5e-65 250.8 201 56.2
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.1e-64 249.6 196 58.7
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 2.1e-64 249.6 191 57.1
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 4.7e-64 248.4 193 59.6
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 6.1e-64 248.1 193 60.6
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 8.0e-64 247.7 193 60.1
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.0e-63 247.3 202 56.4
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.0e-63 247.3 195 59.0
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.4e-63 246.9 194 59.3
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.8e-63 246.5 202 55.9
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 1.8e-63 246.5 202 55.4
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.8e-63 246.5 193 56.0
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.8e-63 246.5 193 57.0
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 2.3e-63 246.1 194 55.2
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 2.3e-63 246.1 168 64.3
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 3.0e-63 245.7 201 58.2
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 3.0e-63 245.7 205 57.1
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 4.0e-63 245.4 194 58.2
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 4.0e-63 245.4 193 56.5
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 5.2e-63 245.0 193 58.0
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.2e-63 245.0 193 59.1
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 6.8e-63 244.6 192 58.9
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 6.8e-63 244.6 198 59.1
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 1.2e-62 243.8 193 58.5
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 2.0e-62 243.0 193 56.0
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 3.4e-62 242.3 194 56.7
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 3.4e-62 242.3 193 57.0
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.4e-62 242.3 193 58.5
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 7.5e-62 241.1 195 54.4
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 9.8e-62 240.7 206 55.3
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 1.3e-61 240.4 202 54.5
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.3e-61 240.4 194 54.1
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 2.2e-61 239.6 229 52.8
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 4.9e-61 238.4 193 55.4
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 4.9e-61 238.4 193 59.1
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.4e-60 236.9 185 59.5
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.0e-59 233.0 195 56.9
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 2.7e-59 232.6 193 57.0
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.5e-59 231.9 193 57.0
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 5.9e-59 231.5 193 57.5
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 7.8e-59 231.1 168 60.7
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.0e-58 230.7 193 56.5
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.9e-58 229.2 181 58.0
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 5.0e-58 228.4 193 56.5
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.6e-58 228.0 193 56.5
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 1.1e-57 227.3 193 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 7.3e-57 224.6 193 52.3
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 1.2e-54 217.2 131 71.0
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 3.7e-53 212.2 193 52.8
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 3.7e-53 212.2 128 71.1
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 8.3e-53 211.1 168 57.1
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.3e-50 203.8 215 46.5
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 1.7e-50 203.4 128 67.2
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 8.6e-50 201.1 188 47.9
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.1e-49 200.7 128 68.8
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 2.5e-49 199.5 195 46.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 4.4e-46 188.7 150 57.3
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 9.2e-44 181.0 128 60.2
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 3.0e-42 176.0 129 56.6
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.5e-41 172.9 186 46.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.6e-40 170.2 119 61.3
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.4e-39 167.2 140 55.0
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.0e-39 165.6 200 45.0
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 5.2e-39 165.2 138 54.3
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.8e-39 164.9 197 41.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 7.1e-36 154.8 143 50.3
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.3e-34 149.8 198 39.4
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 4.3e-33 145.6 171 40.4
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 6.8e-31 138.3 199 38.2
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 4.4e-30 135.6 208 38.5
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.1e-28 131.0 113 52.2
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 3.9e-26 122.5 152 42.1
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 1.5e-25 120.6 79 67.1
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 4.3e-25 119.0 79 65.8
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 7.3e-25 118.2 82 59.8
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 4.0e-23 112.5 65 75.4
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.5e-17 93.2 95 48.4
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 9.0e-15 84.7 58 60.3
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.9e-09 67.0 45 55.6
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 4.8e-08 62.4 122 32.0


User provided reference genes

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