Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.1e-36 156.0 75 100.0
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 2.2e-19 98.6 81 63.0
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.8e-11 71.6 77 46.8
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.8e-11 70.9 56 58.9
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.1e-10 69.7 51 60.8
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 1.8e-10 68.9 39 74.4
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.8e-10 68.9 79 44.3
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.1e-10 67.8 58 58.6
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 4.1e-10 67.8 80 47.5
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 4.1e-10 67.8 86 43.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 7.0e-10 67.0 41 65.9
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.0e-10 67.0 66 50.0
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.0e-10 67.0 66 50.0
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 7.0e-10 67.0 62 51.6
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 9.1e-10 66.6 39 69.2
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 9.1e-10 66.6 39 69.2
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 9.1e-10 66.6 35 74.3
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 9.1e-10 66.6 35 74.3
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-09 66.2 41 68.3
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.6e-09 65.9 54 55.6
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.6e-09 65.9 53 58.5
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.6e-09 65.9 34 79.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.0e-09 65.5 42 66.7
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.0e-09 65.5 42 66.7
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.0e-09 65.5 42 66.7
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.0e-09 65.5 54 59.3
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 2.0e-09 65.5 64 46.9
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.0e-09 65.5 40 70.0
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 2.0e-09 65.5 33 81.8
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 2.7e-09 65.1 76 50.0
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.7e-09 65.1 35 74.3
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.7e-09 65.1 32 87.5
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 3.5e-09 64.7 34 76.5
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 3.5e-09 64.7 35 74.3
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 3.5e-09 64.7 69 46.4
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 3.5e-09 64.7 52 55.8
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 78.8
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 65 43.1
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 78.8
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 78.8
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 3.5e-09 64.7 35 74.3
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 73 42.5
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 78.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 4.5e-09 64.3 35 71.4
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 4.5e-09 64.3 32 84.4
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 5.9e-09 63.9 46 65.2
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 5.9e-09 63.9 33 78.8
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.9e-09 63.9 50 54.0
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.9e-09 63.9 41 65.9
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.9e-09 63.9 35 71.4
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 7.7e-09 63.5 57 59.6
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 7.7e-09 63.5 35 71.4
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 7.7e-09 63.5 35 71.4
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 7.7e-09 63.5 35 74.3
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 7.7e-09 63.5 39 69.2
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 7.7e-09 63.5 40 65.0
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.0e-08 63.2 49 57.1
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.0e-08 63.2 30 86.7
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.0e-08 63.2 35 68.6
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.0e-08 63.2 45 64.4
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 1.3e-08 62.8 35 71.4
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.3e-08 62.8 54 55.6
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.3e-08 62.8 42 61.9
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.7e-08 62.4 33 75.8
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 1.7e-08 62.4 34 73.5
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.7e-08 62.4 34 70.6
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.7e-08 62.4 34 70.6
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.7e-08 62.4 34 70.6
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.7e-08 62.4 41 70.7
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.7e-08 62.4 75 42.7
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.2e-08 62.0 32 78.1
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 2.2e-08 62.0 30 86.7
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.2e-08 62.0 56 48.2
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.2e-08 62.0 56 48.2
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.2e-08 62.0 50 52.0
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.2e-08 62.0 33 75.8
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 2.2e-08 62.0 57 50.9
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.2e-08 62.0 35 68.6
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 2.2e-08 62.0 35 68.6
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 2.9e-08 61.6 34 73.5
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 2.9e-08 61.6 34 73.5
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 2.9e-08 61.6 34 73.5
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 2.9e-08 61.6 34 73.5
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 2.9e-08 61.6 34 73.5
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.9e-08 61.6 63 47.6
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.9e-08 61.6 32 81.2
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 2.9e-08 61.6 74 44.6
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.9e-08 61.6 32 78.1
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 2.9e-08 61.6 34 70.6
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 2.9e-08 61.6 32 78.1
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 2.9e-08 61.6 35 68.6
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 2.9e-08 61.6 30 83.3
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.9e-08 61.6 52 55.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 2.9e-08 61.6 52 55.8
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.9e-08 61.6 59 52.5
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 3.8e-08 61.2 30 83.3
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 3.8e-08 61.2 52 55.8
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 3.8e-08 61.2 67 47.8
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 3.8e-08 61.2 30 83.3
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 3.8e-08 61.2 30 83.3
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.8e-08 61.2 33 75.8
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.8e-08 61.2 33 75.8
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.8e-08 61.2 35 77.1
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.8e-08 61.2 41 65.9
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.8e-08 61.2 32 75.0
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 3.8e-08 61.2 48 60.4
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 3.8e-08 61.2 30 83.3
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 5.0e-08 60.8 30 83.3
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.0e-08 60.8 50 52.0
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 5.0e-08 60.8 32 78.1
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 6.5e-08 60.5 35 65.7
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 6.5e-08 60.5 30 80.0
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 6.5e-08 60.5 30 83.3
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 6.5e-08 60.5 70 45.7
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 6.5e-08 60.5 30 80.0
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 8.5e-08 60.1 30 80.0
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 8.5e-08 60.1 30 80.0
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 8.5e-08 60.1 30 80.0
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 8.5e-08 60.1 30 83.3
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.5e-08 60.1 35 74.3
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.1e-07 59.7 35 62.9
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.1e-07 59.7 32 71.9
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 1.1e-07 59.7 63 49.2
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 1.1e-07 59.7 34 73.5
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.5e-07 59.3 30 76.7
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.9e-07 58.9 44 54.5
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.9e-07 58.9 46 54.3
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.9e-07 58.9 30 80.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.9e-07 58.9 29 86.2
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.5e-07 58.5 30 76.7
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 2.5e-07 58.5 34 76.5
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.5e-07 58.5 35 71.4
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.5e-07 58.5 40 57.5
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 3.2e-07 58.2 30 76.7
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.2e-07 58.2 35 65.7
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 3.2e-07 58.2 30 76.7
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 4.2e-07 57.8 77 42.9
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 4.2e-07 57.8 30 76.7
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.2e-07 57.8 30 73.3
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.2e-07 57.8 30 76.7
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.2e-07 57.8 35 65.7
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.2e-07 57.8 29 82.8
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 5.5e-07 57.4 72 47.2
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 5.5e-07 57.4 56 50.0
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 7.2e-07 57.0 33 69.7
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 7.2e-07 57.0 30 73.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 7.2e-07 57.0 30 73.3
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 9.4e-07 56.6 71 43.7
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 9.4e-07 56.6 49 57.1
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.2e-06 56.2 30 76.7
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.2e-06 56.2 55 47.3
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.6e-06 55.8 35 62.9
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.6e-06 55.8 33 66.7
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.1e-06 55.5 36 61.1
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.1e-06 55.5 50 48.0
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 2.1e-06 55.5 34 64.7
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 3.6e-06 54.7 30 73.3
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.7e-06 54.3 36 61.1
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 8.0e-06 53.5 45 53.3


User provided reference genes

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