Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 0.0e+00 1112.8 557 100.0
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.8e-163 580.1 448 67.2
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.1e-159 566.6 447 66.0
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.1e-159 566.6 447 66.2
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 4.6e-159 565.5 452 64.8
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 6.1e-159 565.1 447 65.3
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.9e-158 562.4 448 65.6
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.1e-157 560.8 448 65.6
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 3.7e-156 555.8 427 67.9
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 8.2e-156 554.7 444 66.2
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.6e-154 549.7 449 64.6
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 4.5e-154 548.9 445 65.2
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 7.7e-154 548.1 447 63.8
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.7e-153 547.0 449 64.4
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 5.0e-153 545.4 445 64.7
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 5.0e-153 545.4 455 63.1
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.5e-152 543.1 431 67.1
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 9.4e-152 541.2 447 62.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.4e-152 541.2 440 64.3
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.4e-150 537.3 447 62.9
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.4e-150 537.3 440 63.9
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.4e-150 537.3 440 63.9
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.3e-150 536.6 450 63.8
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 3.9e-150 535.8 447 63.1
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 6.7e-150 535.0 451 63.6
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 6.7e-150 535.0 450 63.6
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.6e-149 533.1 450 63.3
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 3.3e-149 532.7 436 64.7
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 5.7e-149 531.9 440 63.9
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 9.7e-149 531.2 450 63.6
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.7e-148 530.4 447 62.2
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.8e-148 529.6 436 63.5
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 4.8e-148 528.9 442 62.4
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 4.8e-148 528.9 451 62.5
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 6.3e-148 528.5 448 62.1
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.8e-147 526.9 436 61.9
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.4e-147 526.6 447 61.5
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.4e-147 526.6 448 64.7
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 3.1e-147 526.2 449 62.8
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.1e-147 525.8 447 61.5
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 7.0e-147 525.0 465 61.7
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 7.0e-147 525.0 424 64.6
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.0e-147 525.0 447 61.5
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 7.0e-147 525.0 448 63.8
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 2.0e-146 523.5 466 62.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 3.5e-146 522.7 447 61.5
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.5e-146 522.7 447 61.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 5.9e-146 521.9 434 65.2
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 7.7e-146 521.5 446 61.4
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 7.7e-146 521.5 450 61.3
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 7.7e-146 521.5 464 60.6
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.0e-145 521.2 441 62.1
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 3.8e-145 519.2 435 63.7
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 3.8e-145 519.2 467 61.2
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 6.5e-145 518.5 437 63.6
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 6.5e-145 518.5 460 61.3
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 2.5e-144 516.5 437 63.8
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.2e-144 515.0 430 64.0
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 9.4e-144 514.6 482 58.7
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.2e-143 514.2 430 64.0
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.6e-143 513.8 454 61.5
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.1e-143 513.5 449 62.4
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 2.1e-143 513.5 446 61.4
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.7e-143 513.1 440 61.4
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.6e-143 512.7 447 64.0
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 4.7e-143 512.3 446 63.2
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 6.1e-143 511.9 446 62.8
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 8.0e-143 511.5 446 63.0
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.8e-142 510.4 446 62.6
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.3e-142 510.0 423 62.4
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 3.0e-142 509.6 450 60.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.2e-142 508.8 453 60.3
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 6.7e-142 508.4 446 60.1
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 8.8e-142 508.1 447 63.1
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 8.8e-142 508.1 447 60.6
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.1e-141 507.7 445 61.1
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.1e-141 507.7 447 60.9
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 2.6e-141 506.5 430 62.3
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.6e-141 506.5 426 64.8
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 4.4e-141 505.8 445 60.9
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.4e-141 505.8 449 59.5
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 9.7e-141 504.6 448 61.6
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 9.7e-141 504.6 429 62.5
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.2e-140 503.4 448 60.7
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.8e-140 503.1 427 61.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.8e-140 503.1 427 62.1
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 4.8e-140 502.3 450 61.6
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 4.8e-140 502.3 450 59.1
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 6.3e-140 501.9 429 62.5
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 8.2e-140 501.5 446 59.6
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 8.2e-140 501.5 526 51.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 8.2e-140 501.5 450 60.0
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.4e-139 500.7 450 62.2
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.4e-139 500.7 452 62.2
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.4e-139 500.7 449 62.4
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 1.8e-139 500.4 424 62.3
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.1e-139 499.6 454 62.1
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.1e-139 499.6 417 63.8
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 7.0e-139 498.4 455 60.9
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.0e-139 498.4 432 61.8
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.2e-138 497.7 454 61.0
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.2e-138 497.7 454 61.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.7e-138 496.5 448 61.2
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 3.5e-138 496.1 447 62.2
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 5.9e-138 495.4 451 61.9
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 5.9e-138 495.4 446 59.4
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.0e-137 492.3 447 60.2
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 6.5e-137 491.9 448 60.0
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 8.5e-137 491.5 433 63.5
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.5e-136 490.0 433 63.0
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 2.5e-136 490.0 481 56.3
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 4.2e-136 489.2 449 58.4
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.2e-136 489.2 418 62.7
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 9.4e-136 488.0 448 59.4
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.2e-135 487.6 448 60.9
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.4e-134 484.2 433 62.4
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 4.4e-133 479.2 427 58.5
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 7.5e-133 478.4 452 57.5
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 9.8e-133 478.0 447 60.0
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.9e-128 463.8 450 59.6
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 4.2e-128 462.6 414 59.2
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 7.2e-128 461.8 494 50.6
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.7e-127 459.9 392 62.8
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.1e-127 458.8 442 56.3
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.5e-125 454.1 426 57.0
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.4e-123 445.7 372 63.2
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.9e-121 439.9 427 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 5.2e-118 429.1 442 52.0
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.4e-115 420.2 470 51.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-114 417.9 399 58.1
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.5e-112 410.2 323 68.1
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 2.5e-112 410.2 452 53.5
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.8e-110 404.1 286 71.7
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 6.2e-103 379.0 449 47.9
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 8.1e-103 378.6 445 49.2
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 8.6e-97 358.6 297 64.0
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 3.3e-96 356.7 344 58.4
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 3.6e-95 353.2 498 45.6
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.8e-94 349.0 276 65.6
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.5e-80 303.9 315 54.0
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 9.3e-75 285.4 298 52.3
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 9.3e-75 285.4 445 41.3
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 2.9e-68 263.8 192 67.7
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.4e-67 260.8 210 62.4
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 9.3e-67 258.8 237 59.9
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.1e-65 253.1 192 66.7
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 9.0e-62 242.3 191 65.4
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.6e-58 229.9 520 33.8
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-57 228.0 156 72.4
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.3e-54 216.5 282 47.2
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 8.5e-52 209.1 290 45.2
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 2.7e-50 204.1 227 53.7
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.9e-48 198.0 120 77.5
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.8e-47 194.1 226 50.4
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.0e-41 175.6 130 71.5
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 2.3e-41 174.5 465 31.2
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.7e-41 172.9 171 52.0
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.6e-40 171.0 127 67.7
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 4.4e-40 170.2 306 36.6
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.7e-39 168.3 183 54.6
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 6.9e-38 162.9 291 36.4
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 2.6e-37 161.0 252 43.7
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.9e-28 131.0 76 77.6
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 5.0e-28 130.2 153 50.3
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.7e-26 124.4 79 81.0
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 6.1e-26 123.2 79 72.2
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.3e-20 105.5 146 43.8
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 1.5e-19 102.1 108 53.7
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 4.4e-16 90.5 111 49.5
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 4.4e-16 90.5 78 64.1
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.2e-15 88.2 153 40.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 2.7e-13 81.3 125 40.0
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 5.5e-11 73.6 51 70.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 8.8e-09 66.2 42 78.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-08 65.5 61 55.7
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 2.0e-08 65.1 160 34.4
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 1.4e-06 58.9 51 62.7
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 1.4e-06 58.9 36 69.4
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 2.4e-06 58.2 157 29.9
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 7.0e-06 56.6 76 44.7
SEGI_37721 Sequoiadendron giganteum HOM05D011601 ORTHO05D021003 7.0e-06 56.6 169 29.0


User provided reference genes

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