Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 2.1e-129 467.2 246 100.0
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 2.2e-46 191.4 187 51.3
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 1.4e-45 188.7 240 42.1
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 2.7e-44 184.5 232 43.5
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.4e-43 182.2 219 44.3
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 3.9e-43 180.6 196 45.4
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.5e-42 178.7 232 43.1
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 1.5e-42 178.7 183 48.1
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 2.0e-42 178.3 183 48.6
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 2.0e-42 178.3 185 45.9
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 4.4e-42 177.2 185 45.4
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 9.7e-42 176.0 209 46.4
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 9.7e-42 176.0 211 44.5
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 1.7e-41 175.3 218 40.4
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 2.8e-41 174.5 233 41.6
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 2.8e-41 174.5 232 42.2
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 4.8e-41 173.7 223 40.8
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 4.8e-41 173.7 184 45.7
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 1.8e-40 171.8 183 45.9
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 1.8e-40 171.8 183 45.9
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 3.1e-40 171.0 183 45.9
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 5.3e-40 170.2 181 47.0
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.6e-39 168.7 248 39.9
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 1.3e-38 165.6 207 41.5
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.3e-38 165.6 209 41.6
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 1.3e-38 165.6 232 40.9
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 1.7e-38 165.2 217 40.6
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 2.9e-38 164.5 202 43.6
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 6.5e-38 163.3 207 41.1
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 1.9e-37 161.8 246 38.6
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 4.2e-37 160.6 184 41.3
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 1.2e-36 159.1 226 38.9
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 3.6e-36 157.5 164 46.3
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 6.1e-36 156.8 184 43.5
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 8.0e-36 156.4 230 37.8
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 1.0e-35 156.0 243 38.3
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 1.4e-35 155.6 242 37.2
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 5.2e-35 153.7 183 40.4
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 5.2e-35 153.7 164 45.7
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 8.8e-35 152.9 180 42.8
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 1.2e-34 152.5 235 35.7
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 2.0e-34 151.8 170 44.7
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 9.7e-34 149.4 227 36.1
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 4.8e-33 147.1 203 40.4
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 6.3e-33 146.7 203 39.9
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 8.3e-33 146.4 207 39.6
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 8.3e-33 146.4 184 38.0
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 1.4e-32 145.6 175 41.1
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.8e-32 145.2 191 40.8
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 2.4e-32 144.8 238 37.8
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 5.3e-32 143.7 231 38.1
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 9.1e-32 142.9 166 42.2
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.2e-31 142.5 189 41.8
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 2.0e-31 141.7 205 37.6
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 2.7e-31 141.4 162 42.6
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 7.7e-31 139.8 189 40.2
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 7.7e-31 139.8 189 40.2
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 6.5e-30 136.7 200 39.0
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 1.1e-29 136.0 196 41.8
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 4.2e-29 134.0 210 38.1
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 1.6e-28 132.1 157 42.0
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 1.6e-28 132.1 158 40.5
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 4.7e-28 130.6 188 37.8
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 6.1e-28 130.2 157 40.8
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 8.0e-28 129.8 144 41.0
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 1.8e-27 128.6 220 34.5
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 8.8e-27 126.3 194 35.6
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 1.3e-25 122.5 169 38.5
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 4.8e-25 120.6 84 85.7
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 4.8e-25 120.6 185 36.8
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 6.3e-25 120.2 143 38.5
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 6.3e-25 120.2 190 36.8
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.4e-24 119.0 190 36.3
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 1.8e-24 118.6 207 33.8
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 5.4e-24 117.1 190 35.8
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 1.2e-23 115.9 140 45.7
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.2e-23 115.9 86 82.6
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 2.7e-23 114.8 215 34.9
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 3.5e-23 114.4 187 33.2
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 4.5e-23 114.0 84 82.1
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 4.5e-23 114.0 251 30.7
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 4.5e-23 114.0 134 41.0
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 5.9e-23 113.6 86 82.6
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 7.7e-23 113.2 84 83.3
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 7.7e-23 113.2 134 41.0
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 7.7e-23 113.2 134 40.3
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 1.0e-22 112.8 86 65.1
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 1.7e-22 112.1 86 82.6
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.7e-22 112.1 183 35.0
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 2.3e-22 111.7 84 81.0
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 2.3e-22 111.7 183 37.7
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.9e-22 111.3 86 80.2
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 2.9e-22 111.3 86 79.1
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 1.1e-21 109.4 84 65.5
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.2e-20 105.9 86 80.2
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 1.6e-20 105.5 84 77.4
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 3.6e-20 104.4 198 35.4
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 1.0e-19 102.8 84 60.7
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 3.0e-19 101.3 203 33.0
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 8.9e-19 99.8 84 61.9
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 9.2e-16 89.7 85 57.6
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 7.8e-15 86.7 86 66.3
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 1.0e-14 86.3 84 71.4
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 1.3e-14 85.9 86 46.5
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.8e-12 78.2 82 43.9
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 2.0e-10 72.0 77 46.8
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 2.2e-09 68.6 82 61.0
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 3.2e-08 64.7 58 55.2


User provided reference genes

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