Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 2.4e-148 528.9 274 100.0
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.2e-115 420.2 251 82.1
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.0e-114 414.8 254 80.3
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.9e-113 412.9 248 83.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.3e-111 406.0 251 81.3
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.0e-110 402.9 254 78.7
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.7e-109 399.8 268 76.5
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.7e-109 399.8 255 78.4
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.7e-109 398.7 256 77.0
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 6.3e-109 397.9 252 78.2
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.4e-108 396.7 259 76.8
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.4e-108 396.7 252 78.2
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 4.1e-108 395.2 252 77.8
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.1e-108 395.2 254 79.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 7.0e-108 394.4 254 77.6
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 7.0e-108 394.4 270 73.7
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.6e-107 393.3 256 75.8
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 1.6e-107 393.3 256 75.8
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.5e-107 392.1 254 76.8
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.5e-107 392.1 251 76.1
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 5.9e-107 391.3 258 74.8
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 5.9e-107 391.3 256 76.2
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 7.7e-107 391.0 256 75.4
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 7.7e-107 391.0 270 71.5
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.0e-106 390.6 254 74.8
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.0e-106 390.6 255 75.7
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.0e-106 390.6 256 74.6
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.0e-106 390.6 257 75.5
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.3e-106 390.2 255 75.7
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.7e-106 389.8 268 72.0
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.7e-106 389.8 251 76.1
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.7e-106 389.8 251 76.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 2.2e-106 389.4 267 73.4
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.2e-106 389.4 275 71.3
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.9e-106 389.0 270 73.3
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 3.8e-106 388.7 256 75.4
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.8e-106 388.7 256 75.4
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 3.8e-106 388.7 256 75.4
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.8e-106 388.7 256 76.6
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 5.0e-106 388.3 258 74.4
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 5.0e-106 388.3 236 79.7
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 6.5e-106 387.9 255 74.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 6.5e-106 387.9 251 74.9
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 8.5e-106 387.5 270 73.0
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 8.5e-106 387.5 256 74.6
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.1e-105 387.1 254 74.4
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-105 386.7 254 74.4
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.5e-105 386.7 255 74.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.5e-105 386.7 257 74.7
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.9e-105 386.3 267 73.0
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.9e-105 386.3 254 76.0
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 2.5e-105 386.0 256 75.0
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 2.5e-105 386.0 254 76.0
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.5e-105 386.0 253 73.9
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 3.2e-105 385.6 254 75.2
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 3.2e-105 385.6 260 75.8
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 4.2e-105 385.2 256 74.6
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 5.5e-105 384.8 258 74.4
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 5.5e-105 384.8 253 73.9
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 5.5e-105 384.8 255 73.7
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 5.5e-105 384.8 258 74.4
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 5.5e-105 384.8 255 74.5
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 7.2e-105 384.4 258 74.4
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 7.2e-105 384.4 253 73.9
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 9.4e-105 384.0 253 74.7
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 1.6e-104 383.3 260 75.0
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 2.7e-104 382.5 254 74.0
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.6e-104 382.1 217 82.9
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 3.6e-104 382.1 252 74.2
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.0e-103 380.6 267 70.8
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.0e-103 380.6 245 77.6
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.4e-103 380.2 255 74.5
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.4e-103 380.2 265 72.1
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 3.0e-103 379.0 248 77.0
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.0e-103 379.0 219 82.2
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 4.0e-103 378.6 268 70.5
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 4.0e-103 378.6 252 75.8
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 5.2e-103 378.3 267 72.3
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 5.2e-103 378.3 262 71.8
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 6.8e-103 377.9 293 66.9
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.2e-102 377.1 296 66.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.2e-102 377.1 256 72.3
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.5e-102 376.7 270 72.6
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 2.0e-102 376.3 252 73.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 3.4e-102 375.6 255 73.3
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 3.4e-102 375.6 266 70.7
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 4.4e-102 375.2 219 80.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.4e-102 375.2 255 73.7
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 7.5e-102 374.4 255 73.7
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 7.5e-102 374.4 250 73.2
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 9.8e-102 374.0 256 73.4
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.3e-101 373.6 270 69.3
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 2.2e-101 372.9 255 73.3
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 2.8e-101 372.5 275 66.9
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.7e-101 372.1 213 82.2
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.8e-100 369.8 218 82.1
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 5.4e-100 368.2 219 79.9
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 7.0e-100 367.9 256 71.1
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 7.0e-100 367.9 255 72.2
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 3.5e-99 365.5 267 70.4
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 1.7e-98 363.2 218 79.4
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 7.2e-97 357.8 254 68.5
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 2.8e-96 355.9 228 76.3
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.4e-95 353.6 223 78.5
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.8e-95 353.2 332 58.4
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.5e-94 350.1 262 68.7
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.2e-93 346.3 204 80.4
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.4e-92 342.8 254 69.7
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 4.1e-92 342.0 199 82.4
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 9.2e-92 340.9 216 74.5
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.8e-90 335.5 271 66.8
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.2e-88 330.5 234 69.2
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 4.0e-87 325.5 217 72.4
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 7.5e-86 321.2 216 76.4
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.3e-85 320.5 254 66.1
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 4.1e-84 315.5 231 65.4
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 9.2e-84 314.3 216 73.6
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.7e-83 312.8 174 85.6
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.0e-82 309.3 285 61.4
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.4e-76 289.7 202 68.3
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.0e-66 257.7 225 60.0
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.1e-63 246.1 182 72.0
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 6.4e-61 238.4 139 82.7
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 3.9e-58 229.2 167 70.1
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 8.7e-50 201.4 130 74.6
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.8e-46 188.7 189 58.7
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.2e-30 137.9 251 35.9
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 1.9e-28 130.6 108 58.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.5e-28 130.2 216 41.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 3.0e-26 123.2 83 68.7
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.3e-24 117.9 69 82.6
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.8e-23 114.0 62 80.6
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.4e-23 113.6 124 50.0
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 6.9e-23 112.1 108 52.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 6.9e-23 112.1 64 79.7
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.6e-19 100.9 93 61.3
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.1e-19 100.5 91 60.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 8.8e-18 95.1 225 32.9
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 2.2e-16 90.5 79 53.2
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 8.2e-16 88.6 53 77.4
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 2.2e-13 80.5 42 81.0
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 3.6e-11 73.2 38 81.6
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 4.7e-11 72.8 38 78.9
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.0e-10 70.1 37 81.1
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.8e-08 63.5 31 93.5


User provided reference genes

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