Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 1.2e-61 239.6 116 100.0
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 5.9e-24 114.4 80 67.5
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 7.7e-24 114.0 81 67.9
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.9e-23 112.1 81 67.9
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 5.5e-22 107.8 80 62.5
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.6e-21 106.3 84 59.5
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.6e-21 106.3 80 58.8
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.1e-21 105.9 109 51.4
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 2.7e-21 105.5 85 52.9
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 3.6e-21 105.1 83 59.0
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 4.7e-21 104.8 80 56.2
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 6.1e-21 104.4 82 56.1
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 1.0e-20 103.6 83 60.2
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 1.0e-20 103.6 80 60.0
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.4e-20 103.2 86 58.1
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.4e-20 103.2 85 54.1
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.8e-20 102.8 82 56.1
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 2.3e-20 102.4 85 58.8
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.0e-20 102.1 80 56.2
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 3.0e-20 102.1 96 51.0
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 4.0e-20 101.7 83 61.4
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 4.0e-20 101.7 81 63.0
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 4.0e-20 101.7 81 63.0
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 5.2e-20 101.3 85 57.6
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 5.2e-20 101.3 81 58.0
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 5.2e-20 101.3 84 52.4
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 6.8e-20 100.9 84 57.1
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 6.8e-20 100.9 81 58.0
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 6.8e-20 100.9 81 54.3
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 6.8e-20 100.9 84 59.5
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 8.8e-20 100.5 103 50.5
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.5e-19 99.8 81 58.0
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 1.5e-19 99.8 81 61.7
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 1.5e-19 99.8 81 56.8
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 1.5e-19 99.8 83 57.8
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 1.5e-19 99.8 81 61.7
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 1.5e-19 99.8 83 57.8
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.0e-19 99.4 100 55.0
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.0e-19 99.4 83 60.2
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 2.0e-19 99.4 83 57.8
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.6e-19 99.0 83 56.6
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 2.6e-19 99.0 81 60.5
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 2.6e-19 99.0 82 54.9
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 3.4e-19 98.6 83 59.0
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 3.4e-19 98.6 84 57.1
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.4e-19 98.2 84 57.1
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 5.7e-19 97.8 83 57.8
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 5.7e-19 97.8 81 56.8
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 5.7e-19 97.8 84 57.1
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 5.7e-19 97.8 82 57.3
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 5.7e-19 97.8 82 59.8
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 5.7e-19 97.8 107 47.7
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 9.7e-19 97.1 85 52.9
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.3e-18 96.7 83 55.4
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.3e-18 96.7 83 55.4
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.3e-18 96.7 83 57.8
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.7e-18 96.3 81 56.8
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.7e-18 96.3 83 56.6
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.7e-18 96.3 82 59.8
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.2e-18 95.9 83 57.8
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.8e-18 95.5 83 56.6
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 3.7e-18 95.1 80 57.5
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 3.7e-18 95.1 83 53.0
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 4.8e-18 94.7 83 54.2
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 4.8e-18 94.7 82 58.5
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 1.4e-17 93.2 85 51.8
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 4.1e-17 91.7 81 58.0
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 7.0e-17 90.9 71 60.6
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 7.0e-17 90.9 82 52.4
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 9.1e-17 90.5 73 56.2
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 9.1e-17 90.5 81 58.0
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 9.1e-17 90.5 83 54.2
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 9.1e-17 90.5 82 56.1
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 9.1e-17 90.5 82 56.1
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.2e-16 90.1 81 56.8
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.2e-16 90.1 81 58.0
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.6e-16 89.7 81 58.0
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 1.6e-16 89.7 81 58.0
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.0e-16 89.4 81 58.0
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 2.0e-16 89.4 81 58.0
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 2.7e-16 89.0 72 61.1
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.7e-16 89.0 73 58.9
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 3.5e-16 88.6 74 56.8
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 5.9e-16 87.8 71 59.2
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.0e-15 87.0 84 53.6
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 1.3e-15 86.7 72 56.9
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 2.2e-15 85.9 81 50.6
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 2.2e-15 85.9 80 51.2
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 5.0e-15 84.7 83 48.2
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.5e-14 83.2 77 50.6
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 2.5e-14 82.4 89 49.4
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 4.2e-14 81.6 56 64.3
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 5.5e-14 81.3 81 49.4
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 5.5e-14 81.3 53 64.2
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 7.2e-14 80.9 81 50.6
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 7.2e-14 80.9 83 45.8
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 9.4e-14 80.5 81 50.6
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 1.6e-13 79.7 70 55.7
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 2.1e-13 79.3 81 46.9
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.6e-13 78.6 81 50.6
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 6.1e-13 77.8 81 46.9
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 1.0e-12 77.0 81 46.9
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 1.8e-12 76.3 68 57.4
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 4.0e-12 75.1 81 44.4
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 2.6e-11 72.4 74 48.6
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 3.4e-11 72.0 79 44.3
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 4.4e-11 71.6 81 44.4
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 1.7e-10 69.7 74 47.3
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 2.8e-10 68.9 48 68.8
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 8.3e-10 67.4 45 66.7
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 3.1e-09 65.5 75 42.7
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 7.0e-09 64.3 75 42.7
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 7.0e-09 64.3 85 38.8
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.2e-08 63.5 86 39.5
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 2.0e-08 62.8 64 43.8
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 2.0e-08 62.8 64 43.8
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 5.9e-08 61.2 52 50.0
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 7.7e-08 60.8 64 45.3
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 1.0e-07 60.5 52 50.0
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.0e-07 60.5 52 50.0
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.0e-07 60.5 52 50.0
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 1.3e-07 60.1 61 44.3
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 1.7e-07 59.7 70 41.4
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 2.9e-07 58.9 61 44.3
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 3.8e-07 58.5 57 49.1
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 3.8e-07 58.5 61 44.3
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 3.8e-07 58.5 51 52.9
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 5.0e-07 58.2 52 48.1
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 5.0e-07 58.2 52 48.1
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 3.3e-06 55.5 49 51.0
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 4.2e-06 55.1 64 45.3


User provided reference genes

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