Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G055 Amborella trichopoda HOM05D002453 ORTHO05D002107 3.0e-103 379.8 457 100.0
PGR083G1337 Punica granatum HOM05D002453 ORTHO05D002107 3.7e-21 107.1 127 42.5
Aqoxy4G03056 Aquilegia oxysepala HOM05D004271 ORTHO05D006011 1.4e-20 105.1 141 41.8
CiPaw.05G179100 Carya illinoinensis HOM05D002453 ORTHO05D002107 1.4e-20 105.1 143 41.3
Haze_24017 Corylus avellana HOM05D002453 ORTHO05D002107 1.8e-20 104.8 130 43.8
Duzib150G0859 Durio zibethinus HOM05D004271 ORTHO05D002107 2.4e-20 104.4 131 42.0
CsaV3_1G039170 Cucumis sativus L. HOM05D002453 ORTHO05D002107 3.1e-20 104.0 135 45.2
MELO3C029300.2 Cucumis melo HOM05D002453 ORTHO05D002107 5.4e-20 103.2 122 46.7
Sed0007334 Sechium edule HOM05D002453 ORTHO05D002107 5.4e-20 103.2 143 42.0
ClCG03G016800 Citrullus lanatus HOM05D002453 ORTHO05D002107 7.0e-20 102.8 105 49.5
Prupe.6G086400 Prunus persica HOM05D002453 ORTHO05D002107 9.1e-20 102.4 127 44.1
Cfa011434 Carpinus fangiana HOM05D002453 ORTHO05D002107 1.6e-19 101.7 144 41.7
QL01p033616 Quercus lobata HOM05D004271 ORTHO05D002107 2.0e-19 101.3 144 39.6
Lj1P161T35 Lonicera japonica HOM05D002453 ORTHO05D002107 4.5e-19 100.1 142 38.0
EL10Ac7g15952 Beta vulgaris HOM05D000970 ORTHO05D000788 5.9e-19 99.8 113 44.2
DCAR_014720 Daucus carota HOM05D004271 ORTHO05D002107 5.9e-19 99.8 118 41.5
SHI05977 Sapria himalayana HOM05D004271 ORTHO05D002107 2.3e-18 97.8 131 39.7
Gohir.A13G229300 Gossypium hirsutum HOM05D002453 ORTHO05D002107 3.8e-18 97.1 130 41.5
Dinv26279 Davidia involucrata HOM05D000970 ORTHO05D000788 6.6e-18 96.3 122 41.0
Potri.003G204100 Populus trichocarpa HOM05D004271 ORTHO05D002107 6.6e-18 96.3 141 38.3
RcHm_v2.0_Chr5g0062521 Rosa chinensis HOM05D004271 ORTHO05D006011 8.6e-18 95.9 141 40.4
BcaB03g13373 Brassica carinata HOM05D004271 ORTHO05D006011 1.1e-17 95.5 143 38.5
Lalb_Chr01g0003871 Lupinus albus HOM05D004271 ORTHO05D002107 1.1e-17 95.5 131 38.9
CARHR007530 Cardamine hirsuta HOM05D004271 ORTHO05D006011 1.5e-17 95.1 130 38.5
AT1G07740 Arabidopsis thaliana HOM05D004271 ORTHO05D002107 1.9e-17 94.7 130 39.2
Gorai.013G265600 Gossypium raimondii HOM05D002453 ORTHO05D002107 1.9e-17 94.7 126 39.7
PGSC0003DMG400015540 Solanum tuberosum HOM05D002453 ORTHO05D002107 2.5e-17 94.4 132 38.6
Ciclev10030177m.g Citrus clementina HOM05D000970 ORTHO05D000788 3.3e-17 94.0 139 40.3
GSVIVG01025047001 Vitis vinifera HOM05D007197 ORTHO05D009064 3.3e-17 94.0 128 39.8
CDE08G0939 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 4.2e-17 93.6 112 42.0
MBI15_g22638_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D002107 5.5e-17 93.2 125 39.2
MBI15_g35152_MAGBIO Magnolia biondii HOM05D004271 ORTHO05D002107 5.5e-17 93.2 125 39.2
Manes.11G135700 Manihot esculenta HOM05D004271 ORTHO05D006011 5.5e-17 93.2 125 37.6
Lj4g0009241 Lotus japonicus HOM05D004271 ORTHO05D002107 7.2e-17 92.8 123 41.5
Nn7g38347 Nelumbo nucifera HOM05D002453 ORTHO05D002107 7.2e-17 92.8 125 41.6
Nn7g38348 Nelumbo nucifera HOM05D002453 ORTHO05D002107 7.2e-17 92.8 125 41.6
Ah.08g214900 Amaranthus hybridus HOM05D007197 ORTHO05D009064 9.5e-17 92.4 130 39.2
Solyc11g073230.1 Solanum lycopersicum HOM05D002453 ORTHO05D002107 9.5e-17 92.4 135 37.8
C08p03350 Brassica napus HOM05D000970 ORTHO05D000788 1.2e-16 92.0 143 37.8
TWI31G0770 Tripterygium wilfordii HOM05D004271 ORTHO05D002107 1.6e-16 91.7 113 42.5
AL1G17960 Arabidopsis lyrata HOM05D004271 ORTHO05D002107 2.1e-16 91.3 130 37.7
Eucgr.E02818 Eucalyptus grandis HOM05D004271 ORTHO05D006011 2.1e-16 91.3 129 36.4
Thhalv10009298m.g Eutrema salsugineum HOM05D004271 ORTHO05D006011 2.1e-16 91.3 125 38.4
Glyma.12G067300 Glycine max HOM05D002453 ORTHO05D002107 2.1e-16 91.3 126 40.5
Nitab4.5_0003782g0120 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.1e-16 91.3 140 37.1
Sabra03G0150700 Salix brachista HOM05D002453 ORTHO05D002107 2.1e-16 91.3 141 38.3
Lj3g0020241 Lotus japonicus HOM05D004271 ORTHO05D002107 2.8e-16 90.9 123 40.7
Sopen11g030860 Solanum pennellii HOM05D002453 ORTHO05D002107 2.8e-16 90.9 135 39.3
Thecc.09G329000 Theobroma cacao HOM05D002453 ORTHO05D002107 3.6e-16 90.5 133 39.8
Gohir.D13G234900 Gossypium hirsutum HOM05D002453 ORTHO05D002107 6.1e-16 89.7 96 44.8
Rhsim01G0224000 Rhododendron simsii HOM05D004271 ORTHO05D006011 6.1e-16 89.7 128 41.4
Atru.chr3.3808 Acer truncatum HOM05D002453 ORTHO05D002107 8.0e-16 89.4 145 37.2
MSTRG.12628 Avicennia marina HOM05D004271 ORTHO05D002107 8.0e-16 89.4 129 38.8
AUR62001844 Chenopodium quinoa HOM05D002453 ORTHO05D002107 8.0e-16 89.4 122 39.3
AUR62009635 Chenopodium quinoa HOM05D002453 ORTHO05D009442 8.0e-16 89.4 126 38.9
CAN.G423.43 Capsicum annuum HOM05D002453 ORTHO05D002107 1.0e-15 89.0 128 38.3
FAN16G3353 Fragaria x ananassa HOM05D004271 ORTHO05D002107 1.4e-15 88.6 139 37.4
FAN21G3973 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.4e-15 88.6 139 37.4
Phvul.011G068200 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 1.4e-15 88.6 123 39.8
Nitab4.5_0000610g0200 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.8e-15 88.2 141 36.2
Aa31sc269G30 Aethionema arabicum HOM05D004271 ORTHO05D002107 2.3e-15 87.8 145 35.2
ECA236G2878 Erigeron canadensis HOM05D004271 ORTHO05D002107 2.3e-15 87.8 124 39.5
Sp1g06450 Schrenkiella parvula HOM05D004271 ORTHO05D006011 2.3e-15 87.8 131 38.2
Lsat_1_v5_gn_8_78700 Lactuca sativa HOM05D002453 ORTHO05D002107 3.0e-15 87.4 110 40.9
VMungo1127G0605 Vigna mungo HOM05D002453 ORTHO05D002107 3.0e-15 87.4 124 39.5
Carub.0011s0004 Capsella rubella HOM05D004271 ORTHO05D006011 4.0e-15 87.0 132 37.1
FvH4_3g34780 Fragaria vesca HOM05D002453 ORTHO05D002107 4.0e-15 87.0 139 36.7
FAN11G0465 Fragaria x ananassa HOM05D002453 ORTHO05D002107 4.0e-15 87.0 139 36.7
Sc12g0001740 Simmondsia chinensis HOM05D002453 ORTHO05D002107 4.0e-15 87.0 113 39.8
A08p35460 Brassica napus HOM05D000970 ORTHO05D000788 8.9e-15 85.9 142 36.6
BraA08t35452Z Brassica rapa HOM05D000970 ORTHO05D000788 8.9e-15 85.9 142 36.6
COL.COLO4_18435 Corchorus olitorius HOM05D001223 ORTHO05D001058 8.9e-15 85.9 119 40.3
SEGI_15528 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 1.5e-14 85.1 94 44.7
CSS0034590 Camellia sinensis var. sinensis HOM05D004271 ORTHO05D002107 3.4e-14 84.0 152 35.5
SGA_v2.0_scaffold23G10039 Striga asiatica HOM05D002453 ORTHO05D002107 4.4e-14 83.6 145 34.5
HanXRQChr06g0175961 Helianthus annuus HOM05D002453 ORTHO05D002107 7.5e-14 82.8 123 36.6
Nitab4.5_0003782g0100 Nicotiana tabacum HOM05D002453 ORTHO05D002107 7.5e-14 82.8 140 33.6
SalBow3G0045 Salvia bowleyana HOM05D004271 ORTHO05D002107 7.5e-14 82.8 132 35.6
Medtr4g062480 Medicago truncatula HOM05D002453 ORTHO05D002107 9.8e-14 82.4 110 40.9
Nitab4.5_0003782g0150 Nicotiana tabacum HOM05D002453 ORTHO05D002107 2.2e-13 81.3 141 36.2
Migut.N02658 Erythranthe guttata HOM05D007197 ORTHO05D009064 3.7e-13 80.5 146 35.6
Ca_19202_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 4.9e-13 80.1 123 37.4
Cc01_g12190 Coffea canephora HOM05D000970 ORTHO05D000788 4.9e-13 80.1 122 36.1
Prupe.6G007300 Prunus persica HOM05D002453 ORTHO05D002107 1.4e-12 78.6 158 34.2
Psat7g220120 Pisum sativum HOM05D002453 ORTHO05D002107 4.1e-12 77.0 145 34.5
CAN.G764.12 Capsicum annuum HOM05D002453 ORTHO05D002107 9.2e-12 75.9 81 44.4
Peaxi162Scf00406g00240 Petunia axillaris HOM05D002453 ORTHO05D002107 5.9e-11 73.2 101 38.6
Cpa.g.sc252.14 Carica papaya HOM05D002453 ORTHO05D002107 1.3e-10 72.0 80 42.5
Oeu058523.1 Olea europaea HOM05D002453 ORTHO05D002107 3.8e-10 70.5 81 44.4
HPP92_000749 Vanilla planifolia HOM05D002453 ORTHO05D003966 2.5e-09 67.8 137 32.8
Cpa.g.sc193.15 Carica papaya HOM05D002391 ORTHO05D003966 4.3e-09 67.0 96 41.7
CANSAT11G1193 Cannabis sativa HOM05D002453 ORTHO05D002107 9.5e-09 65.9 90 43.3
RcHm_v2.0_Chr1g0361141 Rosa chinensis HOM05D002391 ORTHO05D003966 2.1e-08 64.7 82 42.7
Potri.014G105900 Populus trichocarpa HOM05D002391 ORTHO05D003966 6.1e-08 63.2 130 35.4
TPR.G36168 Trifolium pratense HOM05D002453 ORTHO05D002107 1.0e-07 62.4 131 31.3
VMungo1309G2974 Vigna mungo HOM05D002391 ORTHO05D003966 2.3e-07 61.2 79 39.2
EL10Ac7g16008 Beta vulgaris HOM05D002453 ORTHO05D008746 5.2e-07 60.1 110 40.0
CSS0028258 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 5.2e-07 60.1 96 38.5
CANSAT35G0902 Cannabis sativa HOM05D002391 ORTHO05D003966 5.2e-07 60.1 79 39.2
Nitab4.5_0003782g0160 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.2e-07 60.1 110 32.7
Phvul.009G258200 Phaseolus vulgaris HOM05D002391 ORTHO05D003966 5.2e-07 60.1 79 39.2
CSS0033944 Camellia sinensis var. sinensis HOM05D002391 ORTHO05D003966 6.8e-07 59.7 96 38.5
PGR031G2326 Punica granatum HOM05D007409 ORTHO05D009264 8.9e-07 59.3 81 32.1
Thecc.01G333200 Theobroma cacao HOM05D002391 ORTHO05D003966 8.9e-07 59.3 80 42.5
FvH4_7g17740 Fragaria vesca HOM05D002391 ORTHO05D003966 1.5e-06 58.5 85 41.2
FAN03G1958 Fragaria x ananassa HOM05D002391 ORTHO05D003966 1.5e-06 58.5 85 41.2
SalBow8G2866 Salvia bowleyana HOM05D002453 ORTHO05D008746 1.5e-06 58.5 102 39.2
BolC3t13394H Brassica oleracea HOM05D002986 ORTHO05D003966 2.0e-06 58.2 104 27.9
FAN06G0076 Fragaria x ananassa HOM05D002391 ORTHO05D003966 2.0e-06 58.2 84 41.7
Nitab4.5_0000755g0080 Nicotiana tabacum HOM05D002391 ORTHO05D003966 2.0e-06 58.2 79 40.5
C03p08980 Brassica napus HOM05D002986 ORTHO05D003966 2.6e-06 57.8 104 26.9
SalBow6G2521 Salvia bowleyana HOM05D004271 ORTHO05D006011 2.6e-06 57.8 79 36.7
COL.COLO4_23049 Corchorus olitorius HOM05D002391 ORTHO05D003966 3.4e-06 57.4 80 41.2
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 3.4e-06 57.4 121 35.5
Ah.05g168090 Amaranthus hybridus HOM05D002453 ORTHO05D008746 4.4e-06 57.0 108 37.0
Glyma.03G261200 Glycine max HOM05D002391 ORTHO05D003966 4.4e-06 57.0 79 41.8
Prupe.2G196300 Prunus persica HOM05D002391 ORTHO05D003966 4.4e-06 57.0 79 39.2
Sabra14G0078000 Salix brachista HOM05D002391 ORTHO05D003966 4.4e-06 57.0 133 32.3
Aa31LG11G13230 Aethionema arabicum HOM05D002986 ORTHO05D003966 5.8e-06 56.6 104 30.8
QL04p053388 Quercus lobata HOM05D002391 ORTHO05D003966 5.8e-06 56.6 79 40.5
AUR62037559 Chenopodium quinoa HOM05D002453 ORTHO05D008746 7.5e-06 56.2 99 40.4
MD01G1088700 Malus domestica HOM05D002391 ORTHO05D003966 7.5e-06 56.2 96 35.4
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 7.5e-06 56.2 82 40.2
CiPaw.02G044800 Carya illinoinensis HOM05D004271 ORTHO05D006011 9.8e-06 55.8 115 33.0
Ciclev10023955m.g Citrus clementina HOM05D002391 ORTHO05D003966 9.8e-06 55.8 79 38.0
FAN06G1021 Fragaria x ananassa HOM05D002391 ORTHO05D003966 9.8e-06 55.8 84 40.5


User provided reference genes

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