Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 0.0e+00 1793.9 948 100.0
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.6e-292 1009.6 878 61.7
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 5.8e-287 991.1 918 59.2
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 1.1e-285 986.9 896 58.8
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 4.3e-282 974.9 904 57.2
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 3.7e-281 971.8 866 59.1
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 1.4e-280 969.9 907 57.6
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.8e-280 969.5 895 57.7
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 1.5e-279 966.5 924 57.1
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 2.6e-279 965.7 930 56.6
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 8.4e-278 960.7 903 57.7
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 1.9e-277 959.5 924 56.2
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 1.6e-276 956.4 880 58.2
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 2.1e-276 956.1 903 56.9
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 2.7e-276 955.7 900 57.0
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.3e-275 953.4 878 58.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 6.7e-275 951.0 925 56.8
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.5e-274 949.1 897 57.3
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 2.2e-273 946.0 922 56.2
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.4e-272 942.6 921 56.2
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 5.3e-272 941.4 894 56.6
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 1.2e-271 940.3 872 57.7
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 1.0e-270 937.2 925 56.6
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 3.8e-270 935.3 875 56.8
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 8.5e-270 934.1 892 56.2
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.2e-269 931.8 875 56.5
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.7e-268 929.1 913 55.4
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.6e-268 928.7 872 56.4
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 1.0e-267 927.2 938 54.1
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.3e-265 920.2 904 55.8
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 2.2e-265 919.5 920 55.7
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 2.8e-265 919.1 933 53.6
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 3.7e-265 918.7 905 54.8
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.4e-264 916.0 867 56.4
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.4e-264 916.0 865 56.0
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 3.1e-264 915.6 829 61.0
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 4.5e-263 911.8 883 55.3
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 5.9e-263 911.4 861 57.0
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 3.2e-261 905.6 899 55.1
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 7.2e-261 904.4 899 54.5
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 3.6e-260 902.1 861 55.6
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 3.6e-260 902.1 881 56.1
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 1.7e-257 893.3 915 54.1
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.7e-257 893.3 866 55.8
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.8e-257 892.5 938 53.0
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 1.1e-256 890.6 936 52.8
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 4.1e-256 888.6 922 53.8
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 4.1e-256 888.6 922 53.8
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 5.3e-256 888.3 923 53.6
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 7.0e-256 887.9 925 53.7
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 9.1e-256 887.5 894 53.5
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 2.0e-255 886.3 930 52.9
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 2.6e-255 885.9 903 53.7
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 7.7e-255 884.4 933 52.7
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 3.8e-254 882.1 872 56.4
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.1e-253 880.6 923 53.1
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 9.4e-253 877.5 873 55.9
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 2.7e-252 875.9 889 53.8
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 3.6e-252 875.5 921 52.3
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 3.6e-252 875.5 870 54.0
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 4.7e-252 875.2 935 53.4
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.1e-250 870.5 912 52.5
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 1.5e-250 870.2 932 52.7
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.4e-248 863.6 905 52.6
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.8e-248 863.2 877 52.5
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.4e-248 862.8 857 53.6
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 1.6e-247 860.1 859 53.9
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 2.0e-247 859.8 937 52.3
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 1.7e-246 856.7 861 52.8
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 2.2e-246 856.3 897 52.6
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 3.8e-246 855.5 905 52.5
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 3.8e-246 855.5 857 54.1
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 7.2e-245 851.3 931 50.7
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 3.6e-244 849.0 930 51.3
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.4e-243 847.0 927 50.9
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 5.2e-243 845.1 903 51.4
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 6.8e-243 844.7 922 51.8
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 1.4e-240 837.0 915 50.8
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 4.1e-240 835.5 866 53.8
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 4.5e-239 832.0 931 50.4
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 4.5e-239 832.0 929 49.8
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.7e-238 830.1 749 58.2
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.1e-237 827.4 1002 48.6
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.0e-234 816.6 940 49.9
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 5.9e-231 805.1 795 55.3
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 9.5e-229 797.7 894 51.6
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 1.5e-226 790.4 732 57.2
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 4.1e-224 782.3 803 52.7
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.5e-221 773.9 947 46.8
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 9.8e-218 761.1 737 56.3
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 2.9e-217 759.6 825 51.8
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.2e-212 744.2 659 59.6
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.3e-211 740.0 862 47.9
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 3.0e-206 723.0 879 45.1
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 4.3e-205 719.2 922 47.4
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 3.4e-202 709.5 884 45.6
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 5.2e-195 685.6 608 59.0
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 3.2e-192 676.4 903 42.5
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 8.7e-190 668.3 893 41.8
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 1.5e-186 657.5 689 53.3
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 4.3e-181 639.4 550 58.9
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 4.3e-165 586.3 550 55.5
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 2.0e-162 577.4 904 40.0
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 8.2e-156 555.4 713 47.1
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 6.5e-153 545.8 797 43.0
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 5.5e-152 542.7 475 58.7
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.0e-117 427.9 480 51.7
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 3.5e-114 417.2 920 31.8
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 4.3e-112 410.2 954 33.5
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 6.2e-103 379.8 977 28.5
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.0e-93 348.2 962 28.9
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 5.8e-93 346.7 421 49.4
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.1e-91 342.4 372 50.0
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.6e-89 332.8 349 51.3
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.5e-80 304.7 429 44.1
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 1.6e-79 302.0 310 51.9
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 8.4e-76 289.7 290 51.7
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.8e-70 271.9 268 54.5
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.1e-67 262.7 312 50.0
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.3e-63 249.2 256 54.3
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 4.5e-61 240.7 465 38.3
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 9.9e-61 239.6 217 57.1
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.6e-58 232.3 367 42.8
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.1e-58 231.9 182 64.8
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.9e-52 210.7 262 42.4
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 6.7e-49 200.3 397 37.0
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.1e-46 191.4 177 53.1
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 6.9e-46 190.3 160 58.8
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 5.5e-43 180.6 162 56.2
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 2.2e-39 168.7 130 66.2
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-32 146.4 129 62.8
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 1.2e-29 136.3 130 53.1
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 6.7e-25 120.6 180 45.0
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 5.7e-24 117.5 119 53.8
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 1.4e-22 112.8 97 58.8
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 3.1e-22 111.7 107 55.1
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.6e-21 108.6 197 34.0
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 7.5e-16 90.5 126 45.2
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.2e-15 89.0 63 74.6
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 1.1e-14 86.7 92 51.1
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 1.2e-13 83.2 172 36.0
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.6e-13 82.8 48 79.2
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 5.9e-13 80.9 179 34.6
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.8e-09 69.3 76 55.3
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.2e-09 67.8 97 44.3
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 4.8e-07 61.2 49 63.3


User provided reference genes

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