Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G044 Amborella trichopoda HOM05D007715 ORTHO05D009760 3.5e-143 511.5 246 100.0
TAR383G0241 Trochodendron aralioides HOM05D007715 ORTHO05D009760 1.1e-101 373.6 236 72.9
Nn2g12750 Nelumbo nucifera HOM05D007715 ORTHO05D009760 1.1e-99 367.1 227 73.6
Aqoxy7G02738 Aquilegia oxysepala HOM05D007715 ORTHO05D009760 1.8e-99 366.3 235 69.8
MBI16_g18218_MAGBIO Magnolia biondii HOM05D007715 ORTHO05D009760 5.3e-99 364.8 226 74.8
Manes.14G008300 Manihot esculenta HOM05D007715 ORTHO05D009760 1.5e-98 363.2 227 74.4
Thecc.06G056700 Theobroma cacao HOM05D007715 ORTHO05D009760 1.8e-94 349.7 224 71.9
Duzib235G0054 Durio zibethinus HOM05D007715 ORTHO05D009760 2.3e-94 349.4 226 73.0
CANSAT01G2071 Cannabis sativa HOM05D007715 ORTHO05D009760 5.1e-94 348.2 226 69.0
Cfa003439 Carpinus fangiana HOM05D007715 ORTHO05D009760 8.8e-94 347.4 224 71.0
Haze_16178 Corylus avellana HOM05D007715 ORTHO05D009760 8.8e-94 347.4 226 69.9
CSS0043564 Camellia sinensis var. sinensis HOM05D007715 ORTHO05D009760 1.1e-93 347.1 225 70.2
RcHm_v2.0_Chr2g0149371 Rosa chinensis HOM05D007715 ORTHO05D009760 1.1e-93 347.1 225 70.7
MD09G1165400 Malus domestica HOM05D007715 ORTHO05D009760 2.0e-93 346.3 238 68.5
Eucgr.F04031 Eucalyptus grandis HOM05D007715 ORTHO05D009760 4.4e-93 345.1 218 69.7
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 4.4e-93 345.1 225 70.2
Ciclev10032622m.g Citrus clementina HOM05D007715 ORTHO05D009760 1.7e-92 343.2 232 69.0
FvH4_6g36931 Fragaria vesca HOM05D007715 ORTHO05D009760 1.7e-92 343.2 225 69.8
Gohir.D06G121500 Gossypium hirsutum HOM05D007715 ORTHO05D009760 3.7e-92 342.0 223 70.9
EL10Ac7g18154 Beta vulgaris HOM05D007715 ORTHO05D009760 4.8e-92 341.7 236 65.7
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 6.3e-92 341.3 225 69.8
Gorai.010G141800 Gossypium raimondii HOM05D007715 ORTHO05D009760 6.3e-92 341.3 223 70.9
Hma1.2p1_1111F.1_g258440 Hydrangea macrophylla HOM05D007715 ORTHO05D009760 1.8e-91 339.7 223 71.3
PSO423G0174 Papaver somniferum HOM05D007715 ORTHO05D009760 9.1e-91 337.4 227 67.4
CDE05G1192 Ceratophyllum demersum HOM05D007715 ORTHO05D004987 1.2e-90 337.0 236 66.1
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.6e-90 336.7 225 68.9
Potri.008G004500 Populus trichocarpa HOM05D007715 ORTHO05D009760 1.6e-90 336.7 228 68.0
Oeu049631.2 Olea europaea HOM05D007715 ORTHO05D009760 2.6e-90 335.9 222 68.9
Oeu049632.1 Olea europaea HOM05D007715 ORTHO05D009760 2.6e-90 335.9 222 68.9
MD17G1162300 Malus domestica HOM05D007715 ORTHO05D009760 3.5e-90 335.5 226 68.6
vmacro18742 Vaccinium macrocarpon HOM05D007715 ORTHO05D009760 3.5e-90 335.5 228 68.4
Actinidia38809 Actinidia chinensis HOM05D007715 ORTHO05D009760 2.2e-89 332.8 223 67.7
CiPaw.02G129300 Carya illinoinensis HOM05D007715 ORTHO05D009760 2.2e-89 332.8 226 67.3
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 3.8e-89 332.0 223 68.2
AUR62025668 Chenopodium quinoa HOM05D007715 ORTHO05D009760 5.0e-89 331.6 236 64.8
Atru.BG.168.p Acer truncatum HOM05D007715 ORTHO05D009760 2.5e-88 329.3 212 72.2
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 5.5e-88 328.2 225 66.2
GSVIVG01029551001 Vitis vinifera HOM05D007715 ORTHO05D009760 9.4e-88 327.4 225 69.3
Cc04_g00030 Coffea canephora HOM05D007715 ORTHO05D009760 1.2e-87 327.0 223 69.1
PGR102G0299 Punica granatum HOM05D007715 ORTHO05D009760 2.1e-87 326.2 224 68.3
CiPaw.01G208900 Carya illinoinensis HOM05D007715 ORTHO05D009760 1.8e-86 323.2 223 66.8
AUR62001337 Chenopodium quinoa HOM05D007715 ORTHO05D009760 1.8e-86 323.2 236 63.6
QL05p088896 Quercus lobata HOM05D007715 ORTHO05D009760 1.8e-86 323.2 282 56.0
Lsat_1_v5_gn_4_89140 Lactuca sativa HOM05D007715 ORTHO05D009760 5.2e-86 321.6 226 65.9
SalBow6G7190 Salvia bowleyana HOM05D007715 ORTHO05D009760 1.3e-84 317.0 237 62.9
Zm00001eb102140 Zea mays HOM05D007715 ORTHO05D009760 9.1e-83 310.8 218 63.8
Cpa.g.sc176.1 Carica papaya HOM05D007715 ORTHO05D009760 1.2e-82 310.5 250 60.4
Hund18594 Selenicereus undatus HOM05D007715 ORTHO05D009760 2.0e-82 309.7 254 58.7
SEGI_32597 Sequoiadendron giganteum HOM05D007715 ORTHO05D009760 7.7e-82 307.8 230 65.2
HPP92_017384 Vanilla planifolia HOM05D007715 ORTHO05D009760 7.7e-82 307.8 206 68.4
PGSC0003DMG400009165 Solanum tuberosum HOM05D007715 ORTHO05D009760 1.3e-81 307.0 231 63.2
Medtr4g005360 Medicago truncatula HOM05D007715 ORTHO05D009760 4.2e-80 302.0 237 59.1
Rhsim08G0250500 Rhododendron simsii HOM05D007715 ORTHO05D009760 6.1e-79 298.1 217 65.0
SGA_v2.0_scaffold71G23984 Striga asiatica HOM05D007715 ORTHO05D009760 6.1e-79 298.1 226 60.6
Migut.I01201 Erythranthe guttata HOM05D007715 ORTHO05D009760 5.2e-78 295.0 228 61.0
AagrBONN_evm.TU.Sc2ySwM_228.4113 Anthoceros agrestis HOM05D007715 ORTHO05D009760 1.1e-75 287.3 225 58.7
Lalb_Chr01g0011671 Lupinus albus HOM05D007715 ORTHO05D009760 1.8e-75 286.6 249 55.8
Pp3c3_690 Physcomitrium patens HOM05D007715 ORTHO05D009760 9.1e-75 284.3 223 58.7
Lj3g0002381 Lotus japonicus HOM05D007715 ORTHO05D009760 1.2e-74 283.9 222 59.5
Psat7g265440 Pisum sativum HOM05D007715 ORTHO05D009760 1.0e-73 280.8 224 57.6
Sp3g18290 Schrenkiella parvula HOM05D007715 ORTHO05D009760 2.2e-73 279.6 224 56.2
Mapoly0008s0087 Marchantia polymorpha HOM05D007715 ORTHO05D009760 1.9e-72 276.6 223 57.4
Duzib192G0685 Durio zibethinus HOM05D007715 ORTHO05D009760 1.0e-70 270.8 177 71.2
Thhalv10020156m.g Eutrema salsugineum HOM05D003198 ORTHO05D009760 5.7e-69 265.0 226 54.9
Glyma.08G224700 Glycine max HOM05D007715 ORTHO05D009760 3.7e-68 262.3 224 57.6
Sabra08G0002100 Salix brachista HOM05D007715 ORTHO05D009760 6.3e-68 261.5 222 57.2
C05p44060 Brassica napus HOM05D007715 ORTHO05D009760 8.3e-68 261.2 225 53.8
A05p28660 Brassica napus HOM05D007715 ORTHO05D009760 7.7e-66 254.6 225 52.0
BraA05t21742Z Brassica rapa HOM05D007715 ORTHO05D009760 1.7e-65 253.4 225 52.0
Nitab4.5_0005739g0020 Nicotiana tabacum HOM05D007715 ORTHO05D009760 2.9e-65 252.7 181 66.9
MSTRG.22499 Avicennia marina HOM05D007715 ORTHO05D009760 1.1e-64 250.8 169 68.0
BolC5t33128H Brassica oleracea HOM05D007715 ORTHO05D009760 5.6e-64 248.4 218 52.8
VMungo0331G1382 Vigna mungo HOM05D007715 ORTHO05D009760 2.1e-63 246.5 232 53.9
FAN20G1905 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.8e-58 228.0 156 67.3
Lj9C542G6 Lonicera japonica HOM05D007715 ORTHO05D009760 9.5e-56 221.1 221 50.7
Phvul.010G164200 Phaseolus vulgaris HOM05D007715 ORTHO05D009760 8.0e-55 218.0 249 46.6
PSO423G0098 Papaver somniferum HOM05D007715 ORTHO05D009760 6.4e-52 208.4 137 70.1
Prupe.3G023100 Prunus persica HOM05D007715 ORTHO05D009760 3.2e-51 206.1 123 78.9
Dinv20335 Davidia involucrata HOM05D007715 ORTHO05D009760 7.0e-51 204.9 122 79.5
Gohir.A06G117200 Gossypium hirsutum HOM05D007715 ORTHO05D009760 2.7e-50 203.0 125 76.8
Nitab4.5_0005664g0070 Nicotiana tabacum HOM05D007715 ORTHO05D009760 1.2e-42 177.6 199 45.7
SMO201G0133 Selaginella moellendorffii HOM05D007715 ORTHO05D009760 6.0e-42 175.3 194 45.9
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.8e-39 166.4 110 66.4
Carub.0003s2020 Capsella rubella HOM05D007715 ORTHO05D009760 6.4e-36 155.2 132 51.5
Peaxi162Scf00038g02642 Petunia axillaris HOM05D007715 ORTHO05D009760 2.7e-34 149.8 103 66.0
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 3.1e-30 136.3 122 54.1
Os09g0497600 Oryza sativa ssp. japonica HOM05D007715 ORTHO05D009760 3.1e-22 109.8 69 65.2
Sopen03g041710 Solanum pennellii HOM05D007715 ORTHO05D009760 2.6e-21 106.7 206 36.4
TPR.G38750 Trifolium pratense HOM05D007715 ORTHO05D009760 2.2e-20 103.6 86 52.3
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 4.2e-19 99.4 108 51.9
TPR.G38822 Trifolium pratense HOM05D007715 ORTHO05D009760 5.4e-19 99.0 86 55.8
Medtr4g005380 Medicago truncatula HOM05D007715 ORTHO05D009760 1.0e-17 94.7 80 47.5
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 3.8e-12 76.3 61 55.7
AL3G33970 Arabidopsis lyrata HOM05D007715 ORTHO05D009760 7.4e-08 62.0 49 57.1
Solyc03g123970.1 Solanum lycopersicum HOM05D007715 ORTHO05D009760 8.1e-07 58.5 50 62.0


User provided reference genes

Program Settings