Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 8.2e-58 226.9 116 100.0
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.2e-37 159.8 106 75.5
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.4e-36 156.4 103 73.8
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.4e-36 156.4 103 73.8
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 2.0e-35 152.5 106 70.8
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 5.7e-35 151.0 103 70.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 7.4e-35 150.6 100 72.0
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 9.7e-35 150.2 106 71.7
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 9.7e-35 150.2 100 71.0
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.2e-34 149.1 110 66.4
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.8e-34 148.7 105 70.5
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.7e-34 148.3 105 67.6
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.7e-34 148.3 105 67.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 3.7e-34 148.3 105 67.6
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 4.8e-34 147.9 106 67.0
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 4.8e-34 147.9 100 71.0
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 6.3e-34 147.5 113 66.4
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.1e-33 146.7 113 66.4
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.1e-33 146.7 105 69.5
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.4e-33 146.4 108 66.7
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.4e-33 146.4 105 66.7
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.4e-33 146.4 103 70.9
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 3.1e-33 145.2 106 63.2
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 5.3e-33 144.4 109 67.0
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 7.0e-33 144.1 109 64.2
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 7.0e-33 144.1 106 65.1
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 9.1e-33 143.7 108 65.7
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 9.1e-33 143.7 107 68.2
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 9.1e-33 143.7 105 66.7
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.2e-32 143.3 106 67.0
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.5e-32 142.9 102 73.5
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.5e-32 142.9 110 64.5
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.0e-32 142.5 100 68.0
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 2.6e-32 142.1 100 68.0
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.5e-32 141.7 106 66.0
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 3.5e-32 141.7 100 70.0
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 3.5e-32 141.7 107 66.4
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 4.5e-32 141.4 103 68.9
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 7.7e-32 140.6 105 65.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 7.7e-32 140.6 101 71.3
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.0e-31 140.2 105 65.7
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 1.0e-31 140.2 110 60.9
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.0e-31 140.2 106 64.2
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.0e-31 140.2 106 64.2
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.3e-31 139.8 110 62.7
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.3e-31 139.8 105 67.6
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 1.7e-31 139.4 110 61.8
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.9e-31 138.7 106 63.2
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.0e-31 137.9 110 65.5
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 5.0e-31 137.9 110 64.5
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 8.5e-31 137.1 110 64.5
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 8.5e-31 137.1 110 64.5
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.1e-30 136.7 110 61.8
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.5e-30 136.3 107 61.7
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.5e-30 136.3 110 64.5
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.9e-30 136.0 107 60.7
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.5e-30 135.6 102 66.7
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 3.2e-30 135.2 105 65.7
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 3.2e-30 135.2 102 68.6
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.2e-30 134.8 103 65.0
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 4.2e-30 134.8 106 63.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 5.5e-30 134.4 102 66.7
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.6e-29 132.9 110 66.4
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.7e-29 132.1 105 60.0
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 3.6e-29 131.7 110 61.8
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 3.6e-29 131.7 110 59.1
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 4.7e-29 131.3 102 65.7
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 6.1e-29 131.0 105 66.7
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 6.1e-29 131.0 108 62.0
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 6.1e-29 131.0 105 61.9
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 6.1e-29 131.0 107 64.5
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 8.0e-29 130.6 100 66.0
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.0e-28 130.2 88 70.5
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.4e-28 129.8 105 62.9
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.4e-28 129.8 103 64.1
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.8e-28 129.4 93 66.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.0e-28 128.6 93 67.7
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.9e-28 128.3 93 67.7
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 3.9e-28 128.3 93 66.7
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.9e-28 128.3 102 64.7
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.1e-27 126.7 93 65.6
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.5e-27 126.3 85 70.6
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.0e-27 125.9 90 71.1
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.6e-27 125.6 92 66.3
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 3.3e-27 125.2 108 64.8
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 3.3e-27 125.2 108 64.8
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 5.7e-27 124.4 108 64.8
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.4e-27 124.0 135 51.1
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.8e-26 122.1 87 71.3
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 2.8e-26 122.1 96 65.6
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.8e-26 122.1 102 61.8
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.8e-26 122.1 100 64.0
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 4.8e-26 121.3 100 63.0
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 6.3e-26 120.9 87 70.1
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 8.2e-26 120.6 87 70.1
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.4e-25 119.8 88 70.5
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.8e-25 119.4 94 66.0
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 1.8e-25 119.4 94 66.0
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.8e-25 119.4 94 66.0
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.8e-25 119.4 94 66.0
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.8e-25 119.4 94 66.0
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.2e-24 116.7 87 67.8
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-24 115.9 98 63.3
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.5e-24 115.2 80 71.2
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 3.5e-24 115.2 95 61.1
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 7.7e-24 114.0 132 49.2
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 7.7e-24 114.0 130 48.5
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 1.0e-23 113.6 72 77.8
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.0e-23 113.6 103 54.4
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 5.0e-23 111.3 77 72.7
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 5.0e-23 111.3 99 60.6
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 6.5e-23 110.9 72 76.4
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 8.5e-23 110.5 74 74.3
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.6e-21 106.3 75 74.7
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.7e-21 105.5 75 74.7
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 6.1e-21 104.4 105 56.2
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.8e-20 102.8 75 70.7
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 3.0e-20 102.1 72 68.1
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.6e-19 99.0 108 52.8
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 2.4e-17 92.4 50 86.0
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 3.1e-17 92.0 50 86.0
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 9.1e-17 90.5 50 88.0
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 3.5e-16 88.6 103 51.5
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.0e-15 87.0 61 70.5
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 2.9e-15 85.5 51 82.4
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.0e-15 84.7 50 80.0
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 8.8e-12 73.9 66 56.1
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 2.6e-11 72.4 74 52.7
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.7e-10 69.7 52 67.3
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 3.1e-09 65.5 74 44.6
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.2e-08 63.5 49 69.4
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.2e-08 63.5 49 69.4
Glyma.08G224900 Glycine max HOM05D005569 ORTHO05D007052 1.1e-06 57.0 29 82.8
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 5.5e-06 54.7 64 53.1


User provided reference genes

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