Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0624G032 Amborella trichopoda HOM05D001687 ORTHO05D001608 2.0e-71 272.3 137 100.0
ATR0680G342 Amborella trichopoda HOM05D001687 ORTHO05D001608 1.6e-36 156.4 237 43.9
ATR0684G026 Amborella trichopoda HOM05D001687 ORTHO05D001608 1.4e-24 116.7 63 87.3
ATR0776G093 Amborella trichopoda HOM05D001687 ORTHO05D001608 2.2e-22 109.4 91 64.8
ATR0691G314 Amborella trichopoda HOM05D001687 ORTHO05D001608 2.6e-18 95.9 64 73.4
ATR0776G042 Amborella trichopoda HOM05D001687 ORTHO05D065626 5.0e-14 81.6 40 100.0
Nn1g04007 Nelumbo nucifera HOM05D001687 ORTHO05D001608 1.3e-09 67.0 95 43.2
Oeu050831.1 Olea europaea HOM05D001687 ORTHO05D001608 1.1e-08 63.9 97 41.2
TAR626G1266 Trochodendron aralioides HOM05D001687 ORTHO05D001608 1.1e-08 63.9 95 42.1
MSTRG.14685 Avicennia marina HOM05D001687 ORTHO05D001608 1.4e-08 63.5 47 63.8
MBI18_g17019_MAGBIO Magnolia biondii HOM05D001687 ORTHO05D001608 1.4e-08 63.5 78 47.4
CSS0012129 Camellia sinensis var. sinensis HOM05D001687 ORTHO05D001608 2.4e-08 62.8 42 66.7
TWI63G0456 Tripterygium wilfordii HOM05D001687 ORTHO05D001608 2.4e-08 62.8 77 45.5
MELO3C002582.2 Cucumis melo HOM05D001687 ORTHO05D001608 4.1e-08 62.0 111 36.9
TAR627G1121 Trochodendron aralioides HOM05D001687 ORTHO05D001608 4.1e-08 62.0 39 74.4
Actinidia01899 Actinidia chinensis HOM05D001687 ORTHO05D001608 5.4e-08 61.6 78 44.9
Sed0011459 Sechium edule HOM05D001687 ORTHO05D001608 5.4e-08 61.6 83 43.4
Actinidia07575 Actinidia chinensis HOM05D001687 ORTHO05D001608 7.0e-08 61.2 78 47.4
CSS0038135 Camellia sinensis var. sinensis HOM05D001687 ORTHO05D001608 7.0e-08 61.2 39 69.2
CANSAT35G0025 Cannabis sativa HOM05D001687 ORTHO05D001608 7.0e-08 61.2 111 37.8
CiPaw.09G056500 Carya illinoinensis HOM05D001687 ORTHO05D001608 7.0e-08 61.2 39 71.8
Manes.16G024800 Manihot esculenta HOM05D001687 ORTHO05D001608 9.1e-08 60.8 39 74.4
TWI38G0660 Tripterygium wilfordii HOM05D001687 ORTHO05D001608 9.1e-08 60.8 39 74.4
Actinidia05610 Actinidia chinensis HOM05D001687 ORTHO05D001608 1.2e-07 60.5 124 33.9
ClCG03G005860 Citrullus lanatus HOM05D001687 ORTHO05D001608 1.6e-07 60.1 39 69.2
Dinv40533 Davidia involucrata HOM05D002794 ORTHO05D001608 2.0e-07 59.7 124 33.9
Migut.H01507 Erythranthe guttata HOM05D001687 ORTHO05D001608 2.7e-07 59.3 47 59.6
Lj1P1208T12 Lonicera japonica HOM05D001687 ORTHO05D001608 2.7e-07 59.3 124 35.5
QL05p039326 Quercus lobata HOM05D001687 ORTHO05D001608 3.5e-07 58.9 47 59.6
QL10p057203 Quercus lobata HOM05D001687 ORTHO05D001608 3.5e-07 58.9 47 59.6
THA.LOC104809572 Tarenaya hassleriana HOM05D001687 ORTHO05D001608 3.5e-07 58.9 85 43.5
GSVIVG01002627001 Vitis vinifera HOM05D001687 ORTHO05D001608 3.5e-07 58.9 49 57.1
ATR0618G276 Amborella trichopoda HOM05D001687 ORTHO05D001608 4.5e-07 58.5 80 41.2
Hma1.2p1_0036F.1_g023660 Hydrangea macrophylla HOM05D001687 ORTHO05D001608 4.5e-07 58.5 95 37.9
SalBow7G2777 Salvia bowleyana HOM05D001687 ORTHO05D001608 4.5e-07 58.5 49 59.2
SalBow7G3362 Salvia bowleyana HOM05D001687 ORTHO05D001608 4.5e-07 58.5 49 59.2
Aqoxy1G02572 Aquilegia oxysepala HOM05D001687 ORTHO05D001608 5.9e-07 58.2 78 46.2
CSS0001834 Camellia sinensis var. sinensis HOM05D001687 ORTHO05D001608 5.9e-07 58.2 39 66.7
CAN.G1627.19 Capsicum annuum HOM05D001687 ORTHO05D001608 5.9e-07 58.2 39 71.8
Peaxi162Scf01163g00021 Petunia axillaris HOM05D001687 ORTHO05D001608 5.9e-07 58.2 39 71.8
Phvul.006G188000 Phaseolus vulgaris HOM05D001687 ORTHO05D001608 5.9e-07 58.2 39 66.7
Potri.004G039300 Populus trichocarpa HOM05D001687 ORTHO05D001608 5.9e-07 58.2 47 59.6
Solyc02g078590.1 Solanum lycopersicum HOM05D001687 ORTHO05D001608 5.9e-07 58.2 39 71.8
Sopen02g023450 Solanum pennellii HOM05D001687 ORTHO05D001608 5.9e-07 58.2 39 71.8
PGSC0003DMG400022433 Solanum tuberosum HOM05D001687 ORTHO05D001608 5.9e-07 58.2 39 71.8
Actinidia06589 Actinidia chinensis HOM05D001687 ORTHO05D001608 1.0e-06 57.4 81 45.7
Cfa000408 Carpinus fangiana HOM05D001687 ORTHO05D001608 1.0e-06 57.4 39 66.7
Haze_06508 Corylus avellana HOM05D001687 ORTHO05D001608 1.0e-06 57.4 39 66.7
Dinv07530 Davidia involucrata HOM05D001687 ORTHO05D001608 1.0e-06 57.4 39 66.7
Migut.M01179 Erythranthe guttata HOM05D001687 ORTHO05D001608 1.0e-06 57.4 79 41.8
TPR.G29044 Trifolium pratense HOM05D001687 ORTHO05D001608 1.0e-06 57.4 78 41.0
Atru.chr10.1948 Acer truncatum HOM05D001687 ORTHO05D001608 1.3e-06 57.0 41 63.4
Glyma.13G241600 Glycine max HOM05D001687 ORTHO05D001608 1.3e-06 57.0 39 64.1
Nitab4.5_0003347g0030 Nicotiana tabacum HOM05D001687 ORTHO05D001608 1.3e-06 57.0 39 69.2
SalBow8G1657 Salvia bowleyana HOM05D001687 ORTHO05D001608 1.3e-06 57.0 47 61.7
HanXRQChr04g0123961 Helianthus annuus HOM05D001687 ORTHO05D001608 1.7e-06 56.6 98 35.7
Potri.011G047700 Populus trichocarpa HOM05D001687 ORTHO05D001608 1.7e-06 56.6 47 59.6
SHI01843 Sapria himalayana HOM05D001687 ORTHO05D000001 1.7e-06 56.6 72 44.4
Eucgr.E03354 Eucalyptus grandis HOM05D001687 ORTHO05D001608 2.3e-06 56.2 77 42.9
Psat1g205920 Pisum sativum HOM05D001687 ORTHO05D001608 2.3e-06 56.2 78 39.7
VMungo0540G0263 Vigna mungo HOM05D001687 ORTHO05D001608 2.3e-06 56.2 39 61.5
arahy.Tifrunner.gnm1.ann1.5ZB6RF Arachis hypogaea HOM05D001687 ORTHO05D001608 2.9e-06 55.8 78 41.0
arahy.Tifrunner.gnm1.ann1.N1AI8B Arachis hypogaea HOM05D001687 ORTHO05D001608 2.9e-06 55.8 78 41.0
Nitab4.5_0003668g0040 Nicotiana tabacum HOM05D001687 ORTHO05D001608 2.9e-06 55.8 39 66.7
A05p07880 Brassica napus HOM05D001687 ORTHO05D001608 3.8e-06 55.5 124 34.7
FAN05G0133 Fragaria x ananassa HOM05D001687 ORTHO05D001608 3.8e-06 55.5 39 61.5
HanXRQChr16g0518221 Helianthus annuus HOM05D001687 ORTHO05D001608 3.8e-06 55.5 50 46.0
Lj6g0013052 Lotus japonicus HOM05D001687 ORTHO05D001608 3.8e-06 55.5 47 53.2
Os04g0529700 Oryza sativa ssp. japonica HOM05D001687 ORTHO05D001608 3.8e-06 55.5 39 61.5
Sabra04G0024100 Salix brachista HOM05D001687 ORTHO05D001608 3.8e-06 55.5 77 41.6
Sabra11G0033100 Salix brachista HOM05D001687 ORTHO05D001608 3.8e-06 55.5 47 57.4
C04p09530 Brassica napus HOM05D001687 ORTHO05D001608 5.0e-06 55.1 124 34.7
BolC4t22559H Brassica oleracea HOM05D001687 ORTHO05D001608 5.0e-06 55.1 124 34.7
Cc02_g12920 Coffea canephora HOM05D001687 ORTHO05D001608 5.0e-06 55.1 39 64.1
DCAR_008050 Daucus carota HOM05D001687 ORTHO05D001608 5.0e-06 55.1 118 34.7
Lsat_1_v5_gn_4_54580 Lactuca sativa HOM05D001687 ORTHO05D001608 5.0e-06 55.1 42 59.5
Potri.016G114200 Populus trichocarpa HOM05D001687 ORTHO05D001608 5.0e-06 55.1 156 30.8
RcHm_v2.0_Chr5g0007781 Rosa chinensis HOM05D001687 ORTHO05D001608 5.0e-06 55.1 39 61.5
SGA_v2.0_scaffold22G09778 Striga asiatica HOM05D001687 ORTHO05D001608 5.0e-06 55.1 125 33.6
BraA05t19754Z Brassica rapa HOM05D001687 ORTHO05D001608 6.6e-06 54.7 124 34.7
Ca_00322_v3 Cicer arietinum L. HOM05D001687 ORTHO05D001608 6.6e-06 54.7 124 29.8
Duzib235G0687 Durio zibethinus HOM05D001687 ORTHO05D001608 6.6e-06 54.7 72 43.1
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 6.6e-06 54.7 39 59.0
Medtr2g013300 Medicago truncatula HOM05D001687 ORTHO05D001608 6.6e-06 54.7 39 61.5
Oeu053948.1 Olea europaea HOM05D001687 ORTHO05D001608 6.6e-06 54.7 49 55.1
Prupe.4G042800 Prunus persica HOM05D001687 ORTHO05D001608 6.6e-06 54.7 39 64.1
RcHm_v2.0_Chr3g0463491 Rosa chinensis HOM05D001687 ORTHO05D001608 6.6e-06 54.7 108 34.3
TAR623G1023 Trochodendron aralioides HOM05D001687 ORTHO05D001608 6.6e-06 54.7 41 53.7
arahy.Tifrunner.gnm1.ann1.64KRD1 Arachis hypogaea HOM05D001687 ORTHO05D001608 8.6e-06 54.3 39 61.5
Duzib160G0473 Durio zibethinus HOM05D001687 ORTHO05D001608 8.6e-06 54.3 39 64.1
Oeu038233.2 Olea europaea HOM05D001687 ORTHO05D001608 8.6e-06 54.3 47 57.4


User provided reference genes

Program Settings