Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 6.2e-114 414.1 200 100.0
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 2.6e-80 302.4 168 82.7
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 5.0e-79 298.1 192 74.5
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.4e-76 290.0 169 77.5
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.4e-76 290.0 192 71.9
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 6.7e-76 287.7 196 70.9
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 2.6e-75 285.8 171 76.0
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 4.4e-75 285.0 171 75.4
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 7.4e-75 284.3 193 68.4
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.3e-74 283.5 169 78.1
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 2.2e-74 282.7 168 76.8
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.8e-74 282.3 191 69.1
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 6.3e-74 281.2 168 78.6
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 8.2e-74 280.8 171 74.3
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 1.1e-73 280.4 193 72.5
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 1.8e-73 279.6 190 68.9
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 1.8e-73 279.6 190 68.9
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.8e-73 279.6 192 68.8
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.4e-73 279.3 193 72.5
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 2.4e-73 279.3 167 77.8
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 3.1e-73 278.9 185 71.9
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.1e-73 278.5 191 68.6
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 5.3e-73 278.1 196 67.3
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 6.9e-73 277.7 173 74.0
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.5e-72 276.6 169 74.0
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.0e-72 276.2 191 68.1
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 2.6e-72 275.8 166 77.1
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 2.6e-72 275.8 175 73.1
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 3.4e-72 275.4 193 68.4
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 5.9e-72 274.6 168 73.8
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 5.9e-72 274.6 168 73.8
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 1.0e-71 273.9 195 67.2
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 1.3e-71 273.5 189 67.7
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 3.8e-71 271.9 207 64.7
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 3.8e-71 271.9 195 65.1
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 5.0e-71 271.6 168 73.2
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.1e-70 270.4 195 65.6
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.4e-70 270.0 168 74.4
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.4e-70 270.0 170 72.4
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.4e-70 270.0 170 72.4
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.4e-70 270.0 170 72.4
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 1.4e-70 270.0 175 71.4
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 1.4e-70 270.0 192 68.2
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.9e-70 269.6 171 70.8
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 1.9e-70 269.6 165 75.2
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 2.5e-70 269.2 193 65.8
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 2.5e-70 269.2 197 64.5
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 3.2e-70 268.9 175 72.6
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 3.2e-70 268.9 193 65.8
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 4.2e-70 268.5 168 73.8
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 5.5e-70 268.1 168 74.4
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 9.4e-70 267.3 168 72.0
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 9.4e-70 267.3 196 65.3
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 1.2e-69 266.9 191 68.1
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.2e-69 266.9 195 65.1
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.6e-69 266.5 166 72.3
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 2.1e-69 266.2 175 70.3
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.1e-69 266.2 165 72.7
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 4.7e-69 265.0 192 66.1
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 4.7e-69 265.0 168 73.2
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 7.9e-69 264.2 165 73.9
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 7.9e-69 264.2 168 71.4
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 1.4e-68 263.5 189 65.6
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.8e-68 263.1 203 63.5
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 2.3e-68 262.7 168 70.2
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 2.3e-68 262.7 168 69.0
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 3.0e-68 262.3 168 70.2
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 2.0e-67 259.6 188 64.9
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.3e-67 258.8 186 64.5
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 3.3e-67 258.8 168 69.0
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 4.4e-67 258.5 187 64.7
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 5.7e-67 258.1 168 71.4
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 9.7e-67 257.3 168 70.8
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 9.7e-67 257.3 217 60.4
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 9.7e-67 257.3 166 70.5
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 9.7e-67 257.3 186 64.0
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 9.7e-67 257.3 200 60.5
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 2.2e-66 256.1 166 69.9
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 3.7e-66 255.4 168 67.9
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 8.2e-66 254.2 190 64.7
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.1e-65 253.8 167 68.3
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 1.1e-65 253.8 168 69.6
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.4e-65 253.4 194 61.9
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.8e-65 253.1 194 61.9
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.1e-65 252.3 165 69.7
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 4.1e-65 251.9 187 64.7
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 9.1e-65 250.8 188 62.2
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.2e-64 250.4 219 58.9
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.2e-64 250.4 219 58.9
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.6e-64 250.0 165 69.1
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.0e-64 249.6 165 69.1
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 2.6e-64 249.2 188 63.8
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 5.9e-64 248.1 168 69.6
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.9e-64 248.1 168 66.7
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 7.7e-64 247.7 168 67.3
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 1.0e-63 247.3 194 62.4
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.0e-63 247.3 169 68.0
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.7e-63 246.5 191 62.8
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 8.5e-63 244.2 188 62.2
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.9e-62 243.0 168 68.5
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.9e-62 243.0 199 61.8
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 5.5e-62 241.5 168 68.5
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.2e-61 240.4 166 65.7
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 2.6e-59 232.6 165 66.1
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 2.6e-59 232.6 145 70.3
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 5.7e-59 231.5 165 66.1
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 2.8e-58 229.2 152 69.7
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 6.3e-58 228.0 193 59.6
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 8.2e-58 227.6 166 64.5
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 4.1e-57 225.3 165 64.2
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 4.1e-57 225.3 165 64.2
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 9.1e-57 224.2 166 65.1
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 1.2e-56 223.8 165 64.2
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 2.0e-56 223.0 165 64.2
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 4.5e-56 221.9 301 43.2
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 7.7e-56 221.1 168 63.1
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 7.2e-54 214.5 128 72.7
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 1.5e-51 206.8 186 56.5
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 3.4e-51 205.7 128 77.3
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 2.8e-50 202.6 174 54.6
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 4.5e-48 195.3 155 63.2
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 1.0e-47 194.1 164 54.3
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 6.5e-47 191.4 151 64.9
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 9.8e-43 177.6 170 50.6
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 1.7e-42 176.8 104 76.9
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 4.7e-37 158.7 167 48.5
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.4e-33 145.2 175 44.6
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 7.0e-33 144.8 168 48.2
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.5e-32 142.5 171 43.9
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 4.6e-32 142.1 173 42.2
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.9e-30 136.7 154 46.1
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.2e-27 127.5 77 70.1
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 6.4e-26 121.7 166 39.8
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 2.0e-24 116.7 186 32.8
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.7e-18 97.1 61 65.6
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 1.3e-15 87.4 65 58.5
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.6e-13 79.3 71 57.7
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 4.4e-11 72.4 66 57.6
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.8e-10 69.3 60 61.7
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 7.1e-09 65.1 124 32.3


User provided reference genes

Program Settings