Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 1.4e-59 232.6 112 100.0
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 8.2e-55 216.9 112 91.1
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 7.6e-53 210.3 112 87.5
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 1.0e-52 209.9 112 87.5
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 1.0e-52 209.9 112 87.5
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 2.9e-52 208.4 112 87.5
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 86.6
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 6.5e-52 207.2 112 87.5
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 1.4e-51 206.1 112 85.7
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.4e-51 206.1 112 86.6
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.9e-51 205.7 112 86.6
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 1.9e-51 205.7 112 84.8
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.5e-51 205.3 112 85.7
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 3.2e-51 204.9 112 86.6
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 3.2e-51 204.9 110 89.1
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 4.2e-51 204.5 112 83.0
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 5.5e-51 204.1 112 87.5
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 83.9
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 9.3e-51 203.4 112 84.8
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.6e-50 202.6 112 85.7
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.6e-50 202.6 111 84.7
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.6e-50 202.6 112 83.0
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 2.1e-50 202.2 112 85.7
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 2.7e-50 201.8 112 83.9
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 84.8
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.9
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.9
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.0
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 3.5e-50 201.4 112 83.9
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 83.0
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 83.9
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 4.6e-50 201.1 112 82.1
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 6.0e-50 200.7 112 83.0
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 6.0e-50 200.7 112 83.9
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 6.0e-50 200.7 112 83.0
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.0e-49 199.9 107 86.9
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.0e-49 199.9 112 82.1
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 1.3e-49 199.5 112 83.0
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 83.0
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.8e-49 199.1 112 82.1
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.3e-49 198.7 112 83.0
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 2.3e-49 198.7 117 82.9
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 83.0
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 83.0
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 3.9e-49 198.0 112 82.1
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 6.7e-49 197.2 112 81.2
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 8.7e-49 196.8 112 80.4
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 8.7e-49 196.8 112 81.2
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.1e-48 196.4 112 82.1
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 82.1
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 1.5e-48 196.1 112 80.4
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 82.1
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 1.9e-48 195.7 112 80.4
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.5e-48 195.3 112 80.4
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 2.5e-48 195.3 112 80.4
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 80.4
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 80.4
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 81.2
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.3e-48 194.9 112 80.4
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 79.5
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 79.5
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 4.3e-48 194.5 112 80.4
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 80.4
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 5.7e-48 194.1 112 79.5
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 79.5
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 79.5
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 9.7e-48 193.4 112 78.6
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.6e-47 192.6 111 82.0
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 1.6e-47 192.6 112 79.5
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 2.8e-47 191.8 112 78.6
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 4.8e-47 191.0 112 80.4
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 6.3e-47 190.7 112 77.7
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 1.1e-46 189.9 112 80.4
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 1.8e-46 189.1 111 80.2
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 4.1e-46 188.0 127 73.2
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 9.0e-46 186.8 112 75.0
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.2e-45 186.4 127 72.4
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.2e-45 186.4 127 72.4
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.5e-45 186.0 139 66.2
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 2.0e-45 185.7 112 75.9
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.5e-45 184.5 112 74.1
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.5e-45 184.5 112 74.1
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 4.5e-45 184.5 112 74.1
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 4.5e-45 184.5 145 64.1
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 5.9e-45 184.1 141 66.0
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 7.6e-45 183.7 112 74.1
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 7.6e-45 183.7 112 74.1
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 3.2e-43 178.3 100 83.0
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 3.2e-43 178.3 107 75.7
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 3.2e-43 178.3 107 75.7
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 1.8e-41 172.6 98 81.6
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 1.8e-41 172.6 110 75.5
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 7.4e-40 167.2 98 80.6
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 6.3e-39 164.1 99 76.8
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 8.2e-39 163.7 130 63.8
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.1e-38 163.3 155 53.5
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 7.7e-37 157.1 108 65.7
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.3e-36 156.4 96 75.0
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 1.3e-36 156.4 98 73.5
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.2e-34 149.8 108 63.0
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 1.6e-34 149.4 79 88.6
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 3.9e-33 144.8 88 70.5
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 8.8e-33 143.7 79 82.3
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 5.7e-32 141.0 109 64.2
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 9.7e-32 140.2 75 90.7
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 1.7e-31 139.4 79 78.5
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.6e-29 132.1 98 64.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 4.5e-29 131.3 75 85.3
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.3e-25 119.0 109 56.9
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 1.1e-24 116.7 64 79.7
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 3.3e-24 115.2 64 75.0
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.3e-24 115.2 64 78.1
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 5.7e-24 114.4 64 76.6
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 7.4e-24 114.0 108 47.2
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 9.7e-24 113.6 64 76.6
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.7e-23 112.8 82 63.4
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 2.8e-23 112.1 64 76.6
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 6.3e-23 110.9 69 78.3
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.2e-23 110.5 64 75.0
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 2.9e-20 102.1 63 74.6
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.7e-18 95.5 110 47.3
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.7e-18 95.5 110 47.3
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 2.3e-17 92.4 155 43.2
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 5.2e-17 91.3 50 82.0
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 2.0e-13 79.3 40 87.5
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 5.0e-12 74.7 45 77.8
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 1.2e-08 63.5 50 68.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 1.2e-08 63.5 50 68.0
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 7.5e-08 60.8 37 67.6
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 3.1e-06 55.5 65 46.2


User provided reference genes

Program Settings